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The map label for this gene is pal [H]

Identifier: 59711570

GI number: 59711570

Start: 1056297

End: 1056863

Strand: Direct

Name: pal [H]

Synonym: VF_0963

Alternate gene names: 59711570

Gene position: 1056297-1056863 (Clockwise)

Preceding gene: 59711569

Following gene: 59711571

Centisome position: 36.46

GC content: 43.74

Gene sequence:

>567_bases
ATGCAACTAAATAAACTTCTTAAGAGCCTTTTAATCGCGTTGCCTGTGGTTGCTCTTTCAGCTTGTAGTTCTAGCGACAG
CGCAACTGACAGTACTGCTGGCCAAGAATCAACTAATGCTGCAGAGACTCAAACAACTAACGGTGCAGAAGGTCAAACAG
ATACAGCTGTTCTATCTTCTATCGAAGCTGATGAAGCAATGAACGAAGCTGAAGTACGTGCTCAAGCTGAGCAAGAACTT
CGTAAAGTTCAAACTGTTTACTTCGCATTTGATAACTCAACAATCTCTTCAGAATACGAAGATATGCTTGCAGCTCACGC
AGCTTTCCTAAGTGCTGATCCTTCAATCAAAGTAACTGTTGAAGGTCACGCTGATGAGCGCGGTACTCCTGAATACAACA
TCGCTCTAGGCGAGCGTCGTGCTAAAGCAGTATCTAAGTACCTACAAGCTCTAGGTGTTTCTGCAGACCAAATCTCTATC
GTAAGCTACGGTGAAGAGAAGCCACTAGTTCTTGGCCAAACAGCTGAAGACTACGCTAAAAACCGTCGTGCAGTATTAGT
ATACTAA

Upstream 100 bases:

>100_bases
TTAAAGCTCGCTTACCAGCGACTAACGGTCGTGTAAGGGCACCAGCGTGGTCGCCATTTTTATAGCTACTAAAAATATTT
AGGAAAATAAGGAAAATACA

Downstream 100 bases:

>100_bases
TCGATAGTTTATAAGGCTGACTTATATGAAATACAGTAACCTTAAGCGAATCATTCCGCTTACGTTGCTGGCTAGTGCGG
CGACCCTTGTGGTCGCCGCA

Product: peptidoglycan-associated outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNAAETQTTNGAEGQTDTAVLSSIEADEAMNEAEVRAQAEQEL
RKVQTVYFAFDNSTISSEYEDMLAAHAAFLSADPSIKVTVEGHADERGTPEYNIALGERRAKAVSKYLQALGVSADQISI
VSYGEEKPLVLGQTAEDYAKNRRAVLVY

Sequences:

>Translated_188_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNAAETQTTNGAEGQTDTAVLSSIEADEAMNEAEVRAQAEQEL
RKVQTVYFAFDNSTISSEYEDMLAAHAAFLSADPSIKVTVEGHADERGTPEYNIALGERRAKAVSKYLQALGVSADQISI
VSYGEEKPLVLGQTAEDYAKNRRAVLVY
>Mature_188_residues
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNAAETQTTNGAEGQTDTAVLSSIEADEAMNEAEVRAQAEQEL
RKVQTVYFAFDNSTISSEYEDMLAAHAAFLSADPSIKVTVEGHADERGTPEYNIALGERRAKAVSKYLQALGVSADQISI
VSYGEEKPLVLGQTAEDYAKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=189, Percent_Identity=54.4973544973545, Blast_Score=185, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20082; Mature: 20082

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNAAETQTTNGAEGQTDTAVLSS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IEADEAMNEAEVRAQAEQELRKVQTVYFAFDNSTISSEYEDMLAAHAAFLSADPSIKVTV
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
EGHADERGTPEYNIALGERRAKAVSKYLQALGVSADQISIVSYGEEKPLVLGQTAEDYAK
ECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCHHHHHC
NRRAVLVY
CCCEEEEC
>Mature Secondary Structure
MQLNKLLKSLLIALPVVALSACSSSDSATDSTAGQESTNAAETQTTNGAEGQTDTAVLSS
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
IEADEAMNEAEVRAQAEQELRKVQTVYFAFDNSTISSEYEDMLAAHAAFLSADPSIKVTV
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
EGHADERGTPEYNIALGERRAKAVSKYLQALGVSADQISIVSYGEEKPLVLGQTAEDYAK
ECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCHHHHHC
NRRAVLVY
CCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]