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The map label for this gene is rarA [H]

Identifier: 59711514

GI number: 59711514

Start: 1001047

End: 1002393

Strand: Direct

Name: rarA [H]

Synonym: VF_0907

Alternate gene names: 59711514

Gene position: 1001047-1002393 (Clockwise)

Preceding gene: 59711513

Following gene: 59711515

Centisome position: 34.55

GC content: 41.43

Gene sequence:

>1347_bases
GTGAGTAATTTCAGTTTAGATTTTTCAGCAGGGGACGATTATCGTCCCCTTGCTGCTAGAATGCGTCCGCAAAATATTGA
GCAATATATTGGTCAACAACACTTGCTAGGTGTTGGTAAACCACTGCGTCGAGCATTAGAAGCGGGTCAAATCCACTCTA
TGATTTTGTGGGGACCTCCGGGAACGGGTAAAACAACATTAGCGGAAGTCGCTGCCAATTATGCGAATGCAGAAGTTGAA
CGTGTTTCAGCGGTAACCTCTGGTGTTAAAGATATCCGTGCTGCCATCGAAAAGGCCAAAGAAAATCAAATTACGGGTCG
AAGAACCATCATGTTTGTGGATGAGGTGCATCGCTTTAATAAAAGCCAGCAAGATGCATTCTTACCACATATTGAAGACG
GCACGATTACCTTTATTGGTGCAACAACAGAAAACCCGTCTTTTGAACTTAATAACGCCTTGTTATCTCGTGCACGTGTA
TACAAATTAAAATCACTAGAAAAAGAAGACATTGTTCAAGTCATTGACCAAGCTTTACTAGATAAAGATCGTGGTTTAAA
TGATGAAAATTTTGTACTACCTGATGATGTGAAATTGCAGTTAGCTGATTTAGTATCAGGCGATGCTCGTATGTCTCTAA
ACTATTTAGAGCTTTTGCATGATATGGCAGAAGAAAACGCACAAGGTAAAAAAGTCGTCGATTTACCATTATTAGCGGAA
GTGGCAGGTGAAAAAGTTGCACGCTTCGATAATAAAGGCGATATGTGGTATGACTTAATATCAGCGGTTCATAAGTCCAT
TCGTGGTTCAAATCCTGATGCGGCTCTTTACTGGACGGCTCGAATTATTGCCGCAGGTGGTGACCCTCTGTATGTAGCTC
GTCGTTTACTTGCTATTGCTTCAGAAGATATCGGTAACGCTGATCCTAGAGCGATGGAAGTCGCAATGAATGCATGGGAT
TGTTTTACTCGCATTGGTCCTGCTGAAGGTGAACGAGCCATTGCTCAAGCCGTGGTTTATTTAGCGTGTGCTCCAAAAAG
TAATGCGGTTTATACGGCATGGAAACAAGCACAAATGGATGCGATAAATTCACCAGATTATGAAGTGCCTAATCATCTTC
GTAATGCACCGACCTCATTAATGAAAGATATGGGGTATGGGTCAGATTATCGTTATGCTCATGATGAGCCAAATGCTTAT
GCGGCGGGTGAGAACTATTTCCCACCTGAAATGCGTGATCGTAAGTATTATTTTCCTACAAAACGTGGTTTAGAAACCAA
AATTAGTGAAAAGCTAGAATATTTAGCCCAATTAGATCAAAACAGTCCGTTAAAACGCTACCAATAA

Upstream 100 bases:

>100_bases
GAAGCCTGCTAAAGATAATTTTACATTTGCGATTCCTGATGGTGTAGATATTGACGATCAACGTTAATAAGCGTGCATCT
AAGAAACTAAAAGGATAAAC

Downstream 100 bases:

>100_bases
AAGGGCATTTTCGGTATCTTATTCGAATCGCAATTTGGAAATGAAAATTGCACAGGATTTTATTATTAAGTGGGTTCTTT
TTATTTTGAACACACCATTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSRARV
YKLKSLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAE
VAGEKVARFDNKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIASEDIGNADPRAMEVAMNAWD
CFTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAY
AAGENYFPPEMRDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ

Sequences:

>Translated_448_residues
MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVE
RVSAVTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSRARV
YKLKSLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAE
VAGEKVARFDNKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIASEDIGNADPRAMEVAMNAWD
CFTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAY
AAGENYFPPEMRDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ
>Mature_447_residues
SNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQIHSMILWGPPGTGKTTLAEVAANYANAEVER
VSAVTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSRARVY
KLKSLEKEDIVQVIDQALLDKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAEV
AGEKVARFDNKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIASEDIGNADPRAMEVAMNAWDC
FTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMDAINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAYA
AGENYFPPEMRDRKYYFPTKRGLETKISEKLEYLAQLDQNSPLKRYQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=42.2727272727273, Blast_Score=307, Evalue=2e-83,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=37.7272727272727, Blast_Score=247, Evalue=1e-65,
Organism=Escherichia coli, GI1787119, Length=448, Percent_Identity=74.3303571428571, Blast_Score=696, Evalue=0.0,
Organism=Escherichia coli, GI1788167, Length=239, Percent_Identity=24.6861924686192, Blast_Score=62, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=429, Percent_Identity=40.7925407925408, Blast_Score=304, Evalue=2e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=210, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49994; Mature: 49863

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQIHSMILWGPP
CCCCEEECCCCCCCCHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHCCCEEEEEEECCC
GTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHC
KSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSRARVYKLKSLEKEDIVQVIDQALL
CCCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAE
HHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VAGEKVARFDNKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIA
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHH
SEDIGNADPRAMEVAMNAWDCFTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMD
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEEEHHHHHHHH
AINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAYAAGENYFPPEMRDRKYYFPT
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCC
KRGLETKISEKLEYLAQLDQNSPLKRYQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SNFSLDFSAGDDYRPLAARMRPQNIEQYIGQQHLLGVGKPLRRALEAGQIHSMILWGPP
CCCEEECCCCCCCCHHHHHCCHHHHHHHCCHHHHHCCCHHHHHHHHCCCEEEEEEECCC
GTGKTTLAEVAANYANAEVERVSAVTSGVKDIRAAIEKAKENQITGRRTIMFVDEVHRFN
CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHC
KSQQDAFLPHIEDGTITFIGATTENPSFELNNALLSRARVYKLKSLEKEDIVQVIDQALL
CCCCCCCCCEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
DKDRGLNDENFVLPDDVKLQLADLVSGDARMSLNYLELLHDMAEENAQGKKVVDLPLLAE
HHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHH
VAGEKVARFDNKGDMWYDLISAVHKSIRGSNPDAALYWTARIIAAGGDPLYVARRLLAIA
HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHH
SEDIGNADPRAMEVAMNAWDCFTRIGPAEGERAIAQAVVYLACAPKSNAVYTAWKQAQMD
HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCCEEEHHHHHHHH
AINSPDYEVPNHLRNAPTSLMKDMGYGSDYRYAHDEPNAYAAGENYFPPEMRDRKYYFPT
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEECCC
KRGLETKISEKLEYLAQLDQNSPLKRYQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]