| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is fabG [H]
Identifier: 59711466
GI number: 59711466
Start: 944929
End: 945654
Strand: Direct
Name: fabG [H]
Synonym: VF_0859
Alternate gene names: 59711466
Gene position: 944929-945654 (Clockwise)
Preceding gene: 59711465
Following gene: 59711467
Centisome position: 32.61
GC content: 42.98
Gene sequence:
>726_bases ATGAAAAGACAAGTATTAGTGACAGGCGCCAGTAAAGGCATTGGTCGCGCAATTTCAGAGCAACTAGCAAAGGATGGCTT TTATATTGTTGTTCATTATATGAGTGATAAAGCTGGCGCAGAGACAACGTTAGCAGCAATTCAAGAGCACGGTGGTGAAG GGCGCTTAATTCAGTTCGATATTAGTGACCGTGCACAATGTAAAGCGACACTTGAGAGTGATATCGAAACTCATGGTGCA TATTATGGTGTGGTAAGTAATGCTGGCATTACTCGTGATACCGCTTTCCCTGCAATGACAGAAGAAGAGTGGGATGGCGT AATTCATACCAATTTAGACAGTTTTTATAATGTACTTCATCCTTGTGTTATGCCGATGGTTCAAAAGCGAAAAGGCGGTC GAATTGTGACGCTTGCATCGGTGTCAGGCATCATGGGTAACCGTGGTCAAACGAACTACAGCGCAGCAAAAGCTGGCGTT ATTGGTGCAACTAAATCTCTTGCGTTAGAGCTAGCAAAACGAAAAATCACAGTAAACTGTGTTGCACCTGGCTTAATTGA TACAGGCATGGTTGATGAGCATGTGAAAGAGCATGCATTGCCACAAGTACCACTTCGAAGAATGGGTGAACCAGAAGAAG TAGCCGGTTTAGTAAGTTACTTAATGTCAGATGTTGCGGGTTATGTGACTCGCCAAGTTATTTCAATTAATGGTGGTTTA GTATGA
Upstream 100 bases:
>100_bases CAACAGTTGGCATCGAGCCAATTAAACGTGTTCGTGCCAACAGAAGAAAAATTAGAAGAGCTCTTAACGCCAAAGCAGTA ACGCAGTAGTAGAGGACAAC
Downstream 100 bases:
>100_bases GTCGTCGTGTAGTCGTAACCGGAATGTCTGGTGTTACCGCTTTAGGTAGTGATTGGAACACCGTAGGCGAAAACCTACGT AAGTGTGAAAATGCCACTCA
Product: 3-ketoacyl-(acyl-carrier-protein) reductase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 241; Mature: 241
Protein sequence:
>241_residues MKRQVLVTGASKGIGRAISEQLAKDGFYIVVHYMSDKAGAETTLAAIQEHGGEGRLIQFDISDRAQCKATLESDIETHGA YYGVVSNAGITRDTAFPAMTEEEWDGVIHTNLDSFYNVLHPCVMPMVQKRKGGRIVTLASVSGIMGNRGQTNYSAAKAGV IGATKSLALELAKRKITVNCVAPGLIDTGMVDEHVKEHALPQVPLRRMGEPEEVAGLVSYLMSDVAGYVTRQVISINGGL V
Sequences:
>Translated_241_residues MKRQVLVTGASKGIGRAISEQLAKDGFYIVVHYMSDKAGAETTLAAIQEHGGEGRLIQFDISDRAQCKATLESDIETHGA YYGVVSNAGITRDTAFPAMTEEEWDGVIHTNLDSFYNVLHPCVMPMVQKRKGGRIVTLASVSGIMGNRGQTNYSAAKAGV IGATKSLALELAKRKITVNCVAPGLIDTGMVDEHVKEHALPQVPLRRMGEPEEVAGLVSYLMSDVAGYVTRQVISINGGL V >Mature_241_residues MKRQVLVTGASKGIGRAISEQLAKDGFYIVVHYMSDKAGAETTLAAIQEHGGEGRLIQFDISDRAQCKATLESDIETHGA YYGVVSNAGITRDTAFPAMTEEEWDGVIHTNLDSFYNVLHPCVMPMVQKRKGGRIVTLASVSGIMGNRGQTNYSAAKAGV IGATKSLALELAKRKITVNCVAPGLIDTGMVDEHVKEHALPQVPLRRMGEPEEVAGLVSYLMSDVAGYVTRQVISINGGL V
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=36.144578313253, Blast_Score=138, Evalue=5e-33, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=35.2697095435685, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=34.2741935483871, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=31.8548387096774, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI4504505, Length=227, Percent_Identity=33.4801762114537, Blast_Score=101, Evalue=5e-22, Organism=Homo sapiens, GI19923817, Length=246, Percent_Identity=31.3008130081301, Blast_Score=100, Evalue=9e-22, Organism=Homo sapiens, GI5031737, Length=256, Percent_Identity=30.46875, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI66933014, Length=149, Percent_Identity=33.5570469798658, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI31542939, Length=202, Percent_Identity=28.7128712871287, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI7705925, Length=243, Percent_Identity=28.3950617283951, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=29.9492385786802, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=30.2702702702703, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI7657478, Length=210, Percent_Identity=30, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4758504, Length=250, Percent_Identity=27.6, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI142976729, Length=214, Percent_Identity=28.0373831775701, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI224922801, Length=166, Percent_Identity=29.5180722891566, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI210032110, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI59889578, Length=195, Percent_Identity=28.7179487179487, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=239, Percent_Identity=43.9330543933054, Blast_Score=183, Evalue=9e-48, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=34.8360655737705, Blast_Score=140, Evalue=5e-35, Organism=Escherichia coli, GI2367175, Length=247, Percent_Identity=34.8178137651822, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=32, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1790717, Length=244, Percent_Identity=27.8688524590164, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1789208, Length=241, Percent_Identity=27.3858921161826, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87082160, Length=244, Percent_Identity=25.8196721311475, Blast_Score=93, Evalue=1e-20, Organism=Escherichia coli, GI1787905, Length=238, Percent_Identity=28.9915966386555, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=28.3400809716599, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=30.2904564315353, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=27.6, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1789057, Length=259, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787526, Length=232, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=197, Percent_Identity=26.9035532994924, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=39.344262295082, Blast_Score=144, Evalue=5e-35, Organism=Caenorhabditis elegans, GI17555706, Length=242, Percent_Identity=37.1900826446281, Blast_Score=139, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=33.4677419354839, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17568967, Length=227, Percent_Identity=31.7180616740088, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.2325581395349, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI115534694, Length=243, Percent_Identity=29.6296296296296, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=31.7708333333333, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562910, Length=255, Percent_Identity=30.1960784313725, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538182, Length=250, Percent_Identity=27.2, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=28.6458333333333, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=27.0161290322581, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538486, Length=258, Percent_Identity=26.7441860465116, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536651, Length=246, Percent_Identity=26.8292682926829, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=26.2135922330097, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=27.1255060728745, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=25.1908396946565, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17508651, Length=260, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=25.7692307692308, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI32563809, Length=198, Percent_Identity=26.7676767676768, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17507613, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17562990, Length=268, Percent_Identity=26.865671641791, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322861, Length=227, Percent_Identity=33.920704845815, Blast_Score=107, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6324126, Length=186, Percent_Identity=27.9569892473118, Blast_Score=82, Evalue=6e-17, Organism=Saccharomyces cerevisiae, GI6322227, Length=210, Percent_Identity=26.1904761904762, Blast_Score=76, Evalue=5e-15, Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=38.5892116182573, Blast_Score=141, Evalue=5e-34, Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=32.520325203252, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=34.8178137651822, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=32.1138211382114, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=31.9838056680162, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI24644339, Length=246, Percent_Identity=30.4878048780488, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24643142, Length=242, Percent_Identity=31.404958677686, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI18859837, Length=227, Percent_Identity=29.5154185022026, Blast_Score=95, Evalue=4e-20, Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=30.8, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24581726, Length=217, Percent_Identity=29.4930875576037, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI24644337, Length=116, Percent_Identity=37.0689655172414, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR011285 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 25834; Mature: 25834
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRQVLVTGASKGIGRAISEQLAKDGFYIVVHYMSDKAGAETTLAAIQEHGGEGRLIQFD CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE ISDRAQCKATLESDIETHGAYYGVVSNAGITRDTAFPAMTEEEWDGVIHTNLDSFYNVLH CCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHH PCVMPMVQKRKGGRIVTLASVSGIMGNRGQTNYSAAKAGVIGATKSLALELAKRKITVNC HHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHEEEEEE VAPGLIDTGMVDEHVKEHALPQVPLRRMGEPEEVAGLVSYLMSDVAGYVTRQVISINGGL ECCCCCCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC V C >Mature Secondary Structure MKRQVLVTGASKGIGRAISEQLAKDGFYIVVHYMSDKAGAETTLAAIQEHGGEGRLIQFD CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE ISDRAQCKATLESDIETHGAYYGVVSNAGITRDTAFPAMTEEEWDGVIHTNLDSFYNVLH CCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHCCCEEECCHHHHHHHHH PCVMPMVQKRKGGRIVTLASVSGIMGNRGQTNYSAAKAGVIGATKSLALELAKRKITVNC HHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHHEEEEEE VAPGLIDTGMVDEHVKEHALPQVPLRRMGEPEEVAGLVSYLMSDVAGYVTRQVISINGGL ECCCCCCCCHHHHHHHHHCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9020051 [H]