| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is pgm [H]
Identifier: 59711423
GI number: 59711423
Start: 894447
End: 896093
Strand: Direct
Name: pgm [H]
Synonym: VF_0816
Alternate gene names: 59711423
Gene position: 894447-896093 (Clockwise)
Preceding gene: 59711422
Following gene: 59711424
Centisome position: 30.87
GC content: 40.38
Gene sequence:
>1647_bases ATGGCTATACATCCTCGTGCTGGGCAGAAAGCTCAGCAAGAAGATTTACACAATATCCCATCATTAGTTGCTAATTATTT CTTATTAGAACCGAACCCAACAAATGTTGATCAGCAAGTGCAATTTGGTACTTCTGGCCACCGTGGTACGGCAGATAAAG CGACGTTTAACCAACATCATATTTGGGCGATAGCTCAAGCTGTGGCTGACGTACGTAAAGAAAATGGCGTAACGGGTCCA TTATTTTTAGGTAAAGATACCCACGCGCTATCTGAACCTGCATTCACATCTGCTATTGAAGTACTTGTTGCTAATGGCGT TGAAGTGATCATTCAAGAAAATAATGGCTACACACCAACTCCTGGTATCTCGCATGCAATCTTAACGCACAATGTTAAGT GTGAAGATAAAGCGGATGGCATTGTGATAACTCCTTCTCATAACCCACCTCAAGATGGCGGTATTAAATATAATCCTGTT CATGGTGGTCCTGCCGAGGGTGAGCTGACGACGGCAATTGAAAATCGTGCAAATCAATTAATTGCAAATGAATTAAAAGA TGTTAAACGTGTATCAATTACTGAAGCGATGTCATCTGATTTAGTAAAGCAAATGGATTTAGTGCAGCCTTATATTGATG ACTTAAAAAATGTTATTAATATTGAAGCGATTCAAAAAGCAAACCTAAAATTAGGTGTTGATCCATTAGGTGGTTCTGGT ATTGAGTACTGGCGTCAAATTGGCCAAGCTTTTGATCTTGATTTAACGTTGGTGAGTGAAGCGATTGATCCTTCATTCCA GTTTATGTCACTAGATAAAGATGGTGTAGTTCGAATGGACTGCTCGTCTCCTTATGCAATGGCTGGTCTATTATCATTAA AAGATGAATATGACCTAGCGTTTGGTAATGATCCTGATTATGACCGTCATGGTATCGTAACGCCATCGGGCTTAATGAAT CCAAATCACTACTTAGCGGTATGTATTGATTATCTATACCGTCATCGTCCAGAGTGGAAACCTGAAGTTGCTGTTGGTAA AACATTAGTATCTTCTGCAATTATCGATAAAGTAGTTGCTGATCTTGGCCGTGATTTGTGTGAAGTGCCTGTAGGCTTTA AGTGGTTTGTAGATGGCTTATATGCAGGCTCTTTAGGCTTTGGTGGTGAAGAAAGTGCAGGTGCTTCTTTCTTACGTTTT GATGGTACGCCTTGGTCAACTGATAAAGATGGTATTCTTTTGTGTCTTCTTGCGGCTGAAATCACAGCTGTTACCGGTAT GAATCCACAAGAATACTACAACAAACTGGCTGCTCAGCATGGCGAATCTAGCTACAATCGTATTCAAGCGGTTGCTAACA AAGCGCAAAAAGCCGTGCTAAGTAAGTTATCACCAGAAATGGTTTCAGCAACAATGCTTGCTGGTGATGAGATCACTGCT CGTTTAACACATGCTCCTGGTAACGGTGCAGCAATTGGTGGATTAAAAGTAACAACTGAAAATGGTTGGTTTGCTGCTCG TCCATCAGGCACAGAAGAGATCTATAAGATTTACTGTGAAAGTTTTAAAGGTGCTGATCACTTAGCACTGATTGAACAAG AAGCTCAAGAAATTGTAAGTAACGTGTTTAAAGAAGCCGGTTTATAA
Upstream 100 bases:
>100_bases GCGAATGGGCTTCCAACATGATTTAACAGAAAAAGTGTGTGCGGCGATCTAATTTTTTGAGTCATAACTCAAATCATAAT TTGTCACAAGGAATCGTCAA
Downstream 100 bases:
>100_bases TTTTTTAAGTAATACAAATTAAGCAGCGCATGTCGCTGCTTTTTTTTGATAAGAAGGTCATGACATGAATAATTTTCAGT TAGAACAATTATTAAACTCA
Product: phosphoglucomutase
Products: NA
Alternate protein names: PGM; Glucose phosphomutase [H]
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MAIHPRAGQKAQQEDLHNIPSLVANYFLLEPNPTNVDQQVQFGTSGHRGTADKATFNQHHIWAIAQAVADVRKENGVTGP LFLGKDTHALSEPAFTSAIEVLVANGVEVIIQENNGYTPTPGISHAILTHNVKCEDKADGIVITPSHNPPQDGGIKYNPV HGGPAEGELTTAIENRANQLIANELKDVKRVSITEAMSSDLVKQMDLVQPYIDDLKNVINIEAIQKANLKLGVDPLGGSG IEYWRQIGQAFDLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLSLKDEYDLAFGNDPDYDRHGIVTPSGLMN PNHYLAVCIDYLYRHRPEWKPEVAVGKTLVSSAIIDKVVADLGRDLCEVPVGFKWFVDGLYAGSLGFGGEESAGASFLRF DGTPWSTDKDGILLCLLAAEITAVTGMNPQEYYNKLAAQHGESSYNRIQAVANKAQKAVLSKLSPEMVSATMLAGDEITA RLTHAPGNGAAIGGLKVTTENGWFAARPSGTEEIYKIYCESFKGADHLALIEQEAQEIVSNVFKEAGL
Sequences:
>Translated_548_residues MAIHPRAGQKAQQEDLHNIPSLVANYFLLEPNPTNVDQQVQFGTSGHRGTADKATFNQHHIWAIAQAVADVRKENGVTGP LFLGKDTHALSEPAFTSAIEVLVANGVEVIIQENNGYTPTPGISHAILTHNVKCEDKADGIVITPSHNPPQDGGIKYNPV HGGPAEGELTTAIENRANQLIANELKDVKRVSITEAMSSDLVKQMDLVQPYIDDLKNVINIEAIQKANLKLGVDPLGGSG IEYWRQIGQAFDLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLSLKDEYDLAFGNDPDYDRHGIVTPSGLMN PNHYLAVCIDYLYRHRPEWKPEVAVGKTLVSSAIIDKVVADLGRDLCEVPVGFKWFVDGLYAGSLGFGGEESAGASFLRF DGTPWSTDKDGILLCLLAAEITAVTGMNPQEYYNKLAAQHGESSYNRIQAVANKAQKAVLSKLSPEMVSATMLAGDEITA RLTHAPGNGAAIGGLKVTTENGWFAARPSGTEEIYKIYCESFKGADHLALIEQEAQEIVSNVFKEAGL >Mature_547_residues AIHPRAGQKAQQEDLHNIPSLVANYFLLEPNPTNVDQQVQFGTSGHRGTADKATFNQHHIWAIAQAVADVRKENGVTGPL FLGKDTHALSEPAFTSAIEVLVANGVEVIIQENNGYTPTPGISHAILTHNVKCEDKADGIVITPSHNPPQDGGIKYNPVH GGPAEGELTTAIENRANQLIANELKDVKRVSITEAMSSDLVKQMDLVQPYIDDLKNVINIEAIQKANLKLGVDPLGGSGI EYWRQIGQAFDLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLSLKDEYDLAFGNDPDYDRHGIVTPSGLMNP NHYLAVCIDYLYRHRPEWKPEVAVGKTLVSSAIIDKVVADLGRDLCEVPVGFKWFVDGLYAGSLGFGGEESAGASFLRFD GTPWSTDKDGILLCLLAAEITAVTGMNPQEYYNKLAAQHGESSYNRIQAVANKAQKAVLSKLSPEMVSATMLAGDEITAR LTHAPGNGAAIGGLKVTTENGWFAARPSGTEEIYKIYCESFKGADHLALIEQEAQEIVSNVFKEAGL
Specific function: This enzyme participates in both the breakdown and synthesis of glucose [H]
COG id: COG0033
COG function: function code G; Phosphoglucomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Homo sapiens, GI133922562, Length=408, Percent_Identity=25.2450980392157, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI290463102, Length=434, Percent_Identity=24.1935483870968, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI21361621, Length=443, Percent_Identity=23.9277652370203, Blast_Score=76, Evalue=1e-13, Organism=Escherichia coli, GI1786904, Length=546, Percent_Identity=69.4139194139194, Blast_Score=793, Evalue=0.0, Organism=Caenorhabditis elegans, GI17535441, Length=439, Percent_Identity=27.7904328018223, Blast_Score=94, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6323752, Length=574, Percent_Identity=25.7839721254355, Blast_Score=105, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6322722, Length=501, Percent_Identity=26.3473053892216, Blast_Score=96, Evalue=1e-20, Organism=Drosophila melanogaster, GI17864244, Length=430, Percent_Identity=26.046511627907, Blast_Score=98, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005852 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2 [H]
Molecular weight: Translated: 59283; Mature: 59152
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: PS00710 PGM_PMM
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIHPRAGQKAQQEDLHNIPSLVANYFLLEPNPTNVDQQVQFGTSGHRGTADKATFNQHH CCCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCCCHHEEECCCCCCCCCCCCCCCCHH IWAIAQAVADVRKENGVTGPLFLGKDTHALSEPAFTSAIEVLVANGVEVIIQENNGYTPT HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC PGISHAILTHNVKCEDKADGIVITPSHNPPQDGGIKYNPVHGGPAEGELTTAIENRANQL CCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH IANELKDVKRVSITEAMSSDLVKQMDLVQPYIDDLKNVINIEAIQKANLKLGVDPLGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCH IEYWRQIGQAFDLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLSLKDEYDLA HHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCEE FGNDPDYDRHGIVTPSGLMNPNHYLAVCIDYLYRHRPEWKPEVAVGKTLVSSAIIDKVVA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DLGRDLCEVPVGFKWFVDGLYAGSLGFGGEESAGASFLRFDGTPWSTDKDGILLCLLAAE HHCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHH ITAVTGMNPQEYYNKLAAQHGESSYNRIQAVANKAQKAVLSKLSPEMVSATMLAGDEITA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEE RLTHAPGNGAAIGGLKVTTENGWFAARPSGTEEIYKIYCESFKGADHLALIEQEAQEIVS EEEECCCCCEEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NVFKEAGL HHHHHCCC >Mature Secondary Structure AIHPRAGQKAQQEDLHNIPSLVANYFLLEPNPTNVDQQVQFGTSGHRGTADKATFNQHH CCCCCCCCCHHHHHHHHHHHHHHCEEEECCCCCCCCHHEEECCCCCCCCCCCCCCCCHH IWAIAQAVADVRKENGVTGPLFLGKDTHALSEPAFTSAIEVLVANGVEVIIQENNGYTPT HHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCC PGISHAILTHNVKCEDKADGIVITPSHNPPQDGGIKYNPVHGGPAEGELTTAIENRANQL CCCCCHHHCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHH IANELKDVKRVSITEAMSSDLVKQMDLVQPYIDDLKNVINIEAIQKANLKLGVDPLGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCH IEYWRQIGQAFDLDLTLVSEAIDPSFQFMSLDKDGVVRMDCSSPYAMAGLLSLKDEYDLA HHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCEEEEECCCCHHHHHHHHHCCCCCEE FGNDPDYDRHGIVTPSGLMNPNHYLAVCIDYLYRHRPEWKPEVAVGKTLVSSAIIDKVVA CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH DLGRDLCEVPVGFKWFVDGLYAGSLGFGGEESAGASFLRFDGTPWSTDKDGILLCLLAAE HHCHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEHHHH ITAVTGMNPQEYYNKLAAQHGESSYNRIQAVANKAQKAVLSKLSPEMVSATMLAGDEITA HHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEE RLTHAPGNGAAIGGLKVTTENGWFAARPSGTEEIYKIYCESFKGADHLALIEQEAQEIVS EEEECCCCCEEECCEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NVFKEAGL HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8083177; 8905232; 9278503; 8011018 [H]