| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is frsA [C]
Identifier: 59711346
GI number: 59711346
Start: 805954
End: 807192
Strand: Direct
Name: frsA [C]
Synonym: VF_0739
Alternate gene names: 59711346
Gene position: 805954-807192 (Clockwise)
Preceding gene: 59711345
Following gene: 59711347
Centisome position: 27.82
GC content: 39.87
Gene sequence:
>1239_bases ATGCCTCAACCAGAGAGTGAAAACCTTTCAGTTAAATTGTTTAAAAACCATAAGCAAGCATTAGAGACGTCAGGCTTGGT TCCTTATCTTCCGAGTAGTTTGGAGCAATTGGAACAAAGTGGGCGTACTTGGTATCGTGAATTACGCCGACCACAATGGA TATGGCAAGGCGTAGATGCAATAGAGCTTGAATCCATATTGGCTCGTATTGCAAATAGTCAAAAGCATCGTTCTCGTGAT GAATGGTTAGATACCGTAAGCGGTTATCATTCTGGAAACTGGGCCTATGAATGGATCCATGCGGGAATGGAACATCAAAA AACGGCTTCGGAACTGGATGGTGATGAGGCAGCAGAAGCGTATTTTAAAGCTAGTTTGTATTTTAGTGTGGCAGGTTATC CTCATATAAAGGGAGATAATCTAGCAATTCAATCACAAGTGTTAGCTAGTCAAGCCTATGATATGGCAGCAAAACAAACT TCTCACCGTGTTGAAAAAATACTTGTACCGTATCAGGGAAGAAAAATAACCTGCTATTTGCATTTACCAAATACAGAAAA ACCATTGCCTGTCGTTATAGTGAGTGGTGGCATGGATTCACTACAAACGGACATGTGGCGTTTGTATCGTGACTTTCTTG CCCCTAATAATATGGCGATGTTGACATTAGATATGCCATCAATAGGTCATAGTTCTCACTGGCCATTAAGTGAAGATTCA AGTTGTTTGCATCAAGCTGTATTGAATTATCTTCCGAATATTCCGTGGGTAGATCGTTTTCATGCTGCTGTTATGGGGTT TCGATTTGGCGGTAATGTCGCATTGCGTCTTTCTTTTTTAGAGCCAAGTCGATTAAAAGCATGTGTTGCATTGGGTGCTC CTGTACATCAAATTCTGACCAATTCAGCAAGATTAAAAACCATGCCTAAAATGTATCTTGACGTGTTAGCTTCAAGGCTG GCTAAGCAAGTTGTTGATATAAATAGCCTTACAAGTCAAATGCAAGCATGGTCGCTAAAAAATCAAGGTTTTTTATCTGG TGGGAGAAAAACATCAGTTTCCGTTTTAGCTATTGGTCTGAAGGATGATCCTGTTTCACCTAAGTCAGATAATAAATTAG CGGCGCTCTTTAGCAAATATGGCAAAGGTGTTGAGCTAAATAGTAAGACATTACATAGTGGCTATGAAGAAGCATTAAAG CAGATGATTGAATGGATCAAAGAGGAAATGAAGCAATAG
Upstream 100 bases:
>100_bases TTTTTTTATTCAAAACTTAATTTTATTCGCTTCTTCATATTCCTTATTCTTCTTTCAGTATATAGTGAGAAGATGAATAT GTTGTTGATTGGTGGTAGAT
Downstream 100 bases:
>100_bases TTTCTCTATTTATTAATAGAATTAAAGTGAAATGTTATTAAATGCTATTTTAAGCTTGTACTGTTCTGATTTGCTTGCTA AAAGTAGTGTCAGTTTTACC
Product: fermentation/respiration switch protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MPQPESENLSVKLFKNHKQALETSGLVPYLPSSLEQLEQSGRTWYRELRRPQWIWQGVDAIELESILARIANSQKHRSRD EWLDTVSGYHSGNWAYEWIHAGMEHQKTASELDGDEAAEAYFKASLYFSVAGYPHIKGDNLAIQSQVLASQAYDMAAKQT SHRVEKILVPYQGRKITCYLHLPNTEKPLPVVIVSGGMDSLQTDMWRLYRDFLAPNNMAMLTLDMPSIGHSSHWPLSEDS SCLHQAVLNYLPNIPWVDRFHAAVMGFRFGGNVALRLSFLEPSRLKACVALGAPVHQILTNSARLKTMPKMYLDVLASRL AKQVVDINSLTSQMQAWSLKNQGFLSGGRKTSVSVLAIGLKDDPVSPKSDNKLAALFSKYGKGVELNSKTLHSGYEEALK QMIEWIKEEMKQ
Sequences:
>Translated_412_residues MPQPESENLSVKLFKNHKQALETSGLVPYLPSSLEQLEQSGRTWYRELRRPQWIWQGVDAIELESILARIANSQKHRSRD EWLDTVSGYHSGNWAYEWIHAGMEHQKTASELDGDEAAEAYFKASLYFSVAGYPHIKGDNLAIQSQVLASQAYDMAAKQT SHRVEKILVPYQGRKITCYLHLPNTEKPLPVVIVSGGMDSLQTDMWRLYRDFLAPNNMAMLTLDMPSIGHSSHWPLSEDS SCLHQAVLNYLPNIPWVDRFHAAVMGFRFGGNVALRLSFLEPSRLKACVALGAPVHQILTNSARLKTMPKMYLDVLASRL AKQVVDINSLTSQMQAWSLKNQGFLSGGRKTSVSVLAIGLKDDPVSPKSDNKLAALFSKYGKGVELNSKTLHSGYEEALK QMIEWIKEEMKQ >Mature_411_residues PQPESENLSVKLFKNHKQALETSGLVPYLPSSLEQLEQSGRTWYRELRRPQWIWQGVDAIELESILARIANSQKHRSRDE WLDTVSGYHSGNWAYEWIHAGMEHQKTASELDGDEAAEAYFKASLYFSVAGYPHIKGDNLAIQSQVLASQAYDMAAKQTS HRVEKILVPYQGRKITCYLHLPNTEKPLPVVIVSGGMDSLQTDMWRLYRDFLAPNNMAMLTLDMPSIGHSSHWPLSEDSS CLHQAVLNYLPNIPWVDRFHAAVMGFRFGGNVALRLSFLEPSRLKACVALGAPVHQILTNSARLKTMPKMYLDVLASRLA KQVVDINSLTSQMQAWSLKNQGFLSGGRKTSVSVLAIGLKDDPVSPKSDNKLAALFSKYGKGVELNSKTLHSGYEEALKQ MIEWIKEEMKQ
Specific function: Unknown
COG id: COG1073
COG function: function code R; Hydrolases of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0255 family [H]
Homologues:
Organism=Escherichia coli, GI1786434, Length=412, Percent_Identity=41.504854368932, Blast_Score=318, Evalue=6e-88,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010520 [H]
Pfam domain/function: PF06500 DUF1100 [H]
EC number: NA
Molecular weight: Translated: 46373; Mature: 46241
Theoretical pI: Translated: 8.42; Mature: 8.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQPESENLSVKLFKNHKQALETSGLVPYLPSSLEQLEQSGRTWYRELRRPQWIWQGVDA CCCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCH IELESILARIANSQKHRSRDEWLDTVSGYHSGNWAYEWIHAGMEHQKTASELDGDEAAEA HHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHHHH YFKASLYFSVAGYPHIKGDNLAIQSQVLASQAYDMAAKQTSHRVEKILVPYQGRKITCYL HHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE HLPNTEKPLPVVIVSGGMDSLQTDMWRLYRDFLAPNNMAMLTLDMPSIGHSSHWPLSEDS ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCH SCLHQAVLNYLPNIPWVDRFHAAVMGFRFGGNVALRLSFLEPSRLKACVALGAPVHQILT HHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHHCCHHHHHHC NSARLKTMPKMYLDVLASRLAKQVVDINSLTSQMQAWSLKNQGFLSGGRKTSVSVLAIGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC KDDPVSPKSDNKLAALFSKYGKGVELNSKTLHSGYEEALKQMIEWIKEEMKQ CCCCCCCCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PQPESENLSVKLFKNHKQALETSGLVPYLPSSLEQLEQSGRTWYRELRRPQWIWQGVDA CCCCCCCCEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCCH IELESILARIANSQKHRSRDEWLDTVSGYHSGNWAYEWIHAGMEHQKTASELDGDEAAEA HHHHHHHHHHHCCHHHCCHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHCCCHHHHHH YFKASLYFSVAGYPHIKGDNLAIQSQVLASQAYDMAAKQTSHRVEKILVPYQGRKITCYL HHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE HLPNTEKPLPVVIVSGGMDSLQTDMWRLYRDFLAPNNMAMLTLDMPSIGHSSHWPLSEDS ECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCH SCLHQAVLNYLPNIPWVDRFHAAVMGFRFGGNVALRLSFLEPSRLKACVALGAPVHQILT HHHHHHHHHHCCCCCCHHHHHHHHHHHEECCCEEEEEEECCCHHHHHHHHHCCHHHHHHC NSARLKTMPKMYLDVLASRLAKQVVDINSLTSQMQAWSLKNQGFLSGGRKTSVSVLAIGL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC KDDPVSPKSDNKLAALFSKYGKGVELNSKTLHSGYEEALKQMIEWIKEEMKQ CCCCCCCCCCCHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA