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The map label for this gene is ppdD [C]

Identifier: 59711179

GI number: 59711179

Start: 625622

End: 626059

Strand: Direct

Name: ppdD [C]

Synonym: VF_0572

Alternate gene names: 59711179

Gene position: 625622-626059 (Clockwise)

Preceding gene: 59711173

Following gene: 59711181

Centisome position: 21.59

GC content: 32.88

Gene sequence:

>438_bases
ATGGAAATGATTCTAATAAATAAATGTAACTCTAAATATAATCATACAAGAGGTATGACATTGATCGAATTAATGATTGC
TATTGCAGTGATAGGTCTATTGTCTGCTATTGCTTATCCCGCATATACAAATCATATTTTAAAAGCTAATAGAATTGCAG
TATTGGCAGATATTGCAAAGATTCAATTAGAAATCGAAGAAAAGTATATAAATAGTTATTCTAGTATCGCATCATCAATC
ATCAGCGGAGGAACCTGCTCTTTCTGTGATACGCAATTAGATAAATATACGCTGAGTTTTGAGGATTTGACCGCTACGAC
TTACACAATTAAAGCAGTCCCTAAAAATGAGCAACAAAATGATACTTGTGCAGGTAATAGTTATAATGAGATTACGCTAA
ATCAGTTTAATGTAGCGAGCCCTAGTGAGTGTTGGTAA

Upstream 100 bases:

>100_bases
CATCTCTCAATTTCCTTTGTAACTTATTGATAGAGCAGCAATAACGCTTGCGTAAATTATATCAACTATTAAGAATATAA
AGATGCTAGGTAGAGGATAA

Downstream 100 bases:

>100_bases
ATAAAGGTGAGCATTTATAGTAATCGTACCCACCTTTGTATTCATCAATCACGCAACAAAAGCTAACACACCACCTGCAA
TAATAAAGAAGCTAACTAAT

Product: pili subunit PilA1

Products: NA

Alternate protein names: Type IV Pilin; Tfp Pilus Assembly Protein PilE; Type IV Pilin PilE; Type IV Pilus Assembly Protein PilE; Fimbrial Protein Pilin; Methylation Site Containing Protein; Prepilin Like Protein

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MEMILINKCNSKYNHTRGMTLIELMIAIAVIGLLSAIAYPAYTNHILKANRIAVLADIAKIQLEIEEKYINSYSSIASSI
ISGGTCSFCDTQLDKYTLSFEDLTATTYTIKAVPKNEQQNDTCAGNSYNEITLNQFNVASPSECW

Sequences:

>Translated_145_residues
MEMILINKCNSKYNHTRGMTLIELMIAIAVIGLLSAIAYPAYTNHILKANRIAVLADIAKIQLEIEEKYINSYSSIASSI
ISGGTCSFCDTQLDKYTLSFEDLTATTYTIKAVPKNEQQNDTCAGNSYNEITLNQFNVASPSECW
>Mature_145_residues
MEMILINKCNSKYNHTRGMTLIELMIAIAVIGLLSAIAYPAYTNHILKANRIAVLADIAKIQLEIEEKYINSYSSIASSI
ISGGTCSFCDTQLDKYTLSFEDLTATTYTIKAVPKNEQQNDTCAGNSYNEITLNQFNVASPSECW

Specific function: Not Yet Known. [C]

COG id: COG4968

COG function: function code NU; Tfp pilus assembly protein PilE

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16060; Mature: 16060

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMILINKCNSKYNHTRGMTLIELMIAIAVIGLLSAIAYPAYTNHILKANRIAVLADIAK
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHEEHHHH
IQLEIEEKYINSYSSIASSIISGGTCSFCDTQLDKYTLSFEDLTATTYTIKAVPKNEQQN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHEEECHHHCEEEEEEEEECCCCCCCC
DTCAGNSYNEITLNQFNVASPSECW
CCCCCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MEMILINKCNSKYNHTRGMTLIELMIAIAVIGLLSAIAYPAYTNHILKANRIAVLADIAK
CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHEEHHHH
IQLEIEEKYINSYSSIASSIISGGTCSFCDTQLDKYTLSFEDLTATTYTIKAVPKNEQQN
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCHHEEECHHHCEEEEEEEEECCCCCCCC
DTCAGNSYNEITLNQFNVASPSECW
CCCCCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA