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The map label for this gene is rimM [H]

Identifier: 59711157

GI number: 59711157

Start: 598796

End: 599323

Strand: Direct

Name: rimM [H]

Synonym: VF_0550

Alternate gene names: 59711157

Gene position: 598796-599323 (Clockwise)

Preceding gene: 59711156

Following gene: 59711158

Centisome position: 20.67

GC content: 39.58

Gene sequence:

>528_bases
ATGAGTAAGCAAGACGAAGTTATTGTTGTAGGTAAGTTTGGTGCTTCCTATGGTATTCGTGGATGGTTGAAAGTAGTTTC
TTTTACAGATCAACCTGAAAGTATTTTCGACTACAAACCTTGGCTTATCCAAGTTAAAGGTGAATGGGTCGAGTTTTCAG
TTGAAAGCTGGAAACGTCATAAAGGTTTGGTGTGCAAACTGAAAGGGTTAGATGTTCGAGAAGAAGCTCAAACATATACT
AACCTAGAAATTGCAGTTAAAGCAGACGCACTACCTGAGCTGTCAGAAGATGAATTCTACTGGCGTGAATTGTTTGGTAT
GGAAGTGGTTACAACTAAAGGCTATGCGCTTGGCGTTGTTGACGACATTTTTGAAACCGGATCAAACGATGTTCTTGTAG
TCAAAGCCAACCTGAAAGATGCTTTTGGTAAAAAGGAACGATTGATTCCTTTTATTGATGAGCAAGTGATCAAATTAATT
GATCGTGAAGCTCAACGGATCGAAGTTGACTGGGATCCTGGGTTTTAA

Upstream 100 bases:

>100_bases
CTGGGTTGAGCAAGGCGCTGGTCTTTCTGATCGTGTAGCTAAGCTAGTTAAAGACGCTAAAAAAGCGGCTTAATATTAGT
TGGTTAAAGGTAAAGAATTT

Downstream 100 bases:

>100_bases
CCCCTAGGTAAAGCGAGGGCACATGTGGGTTGGCGTTATTAGCCTATTTCCTGAAATGTTCCGTTCGGTTACCGATTTTG
GGGTAACTAGCCAAGCAATA

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRHKGLVCKLKGLDVREEAQTYT
NLEIAVKADALPELSEDEFYWRELFGMEVVTTKGYALGVVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLI
DREAQRIEVDWDPGF

Sequences:

>Translated_175_residues
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRHKGLVCKLKGLDVREEAQTYT
NLEIAVKADALPELSEDEFYWRELFGMEVVTTKGYALGVVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLI
DREAQRIEVDWDPGF
>Mature_174_residues
SKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRHKGLVCKLKGLDVREEAQTYTN
LEIAVKADALPELSEDEFYWRELFGMEVVTTKGYALGVVDDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLID
REAQRIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=60.3550295857988, Blast_Score=214, Evalue=2e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20098; Mature: 19967

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH
CCCCCCEEEEECCCCCCCHHEEEEEEECCCCCCHHCCCCCEEEEEECCEEEEEHHHHHCC
KGLVCKLKGLDVREEAQTYTNLEIAVKADALPELSEDEFYWRELFGMEVVTTKGYALGVV
CCEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCEEEEEECCEEEEHH
DDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVDWDPGF
HHHHHCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC
>Mature Secondary Structure 
SKQDEVIVVGKFGASYGIRGWLKVVSFTDQPESIFDYKPWLIQVKGEWVEFSVESWKRH
CCCCCEEEEECCCCCCCHHEEEEEEECCCCCCHHCCCCCEEEEEECCEEEEEHHHHHCC
KGLVCKLKGLDVREEAQTYTNLEIAVKADALPELSEDEFYWRELFGMEVVTTKGYALGVV
CCEEEEEECCCCHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCEEEEEECCEEEEHH
DDIFETGSNDVLVVKANLKDAFGKKERLIPFIDEQVIKLIDREAQRIEVDWDPGF
HHHHHCCCCCEEEEEECCCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA