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The map label for this gene is nusA [H]

Identifier: 59711092

GI number: 59711092

Start: 519713

End: 521200

Strand: Direct

Name: nusA [H]

Synonym: VF_0485

Alternate gene names: 59711092

Gene position: 519713-521200 (Clockwise)

Preceding gene: 59711091

Following gene: 59711093

Centisome position: 17.94

GC content: 41.06

Gene sequence:

>1488_bases
ATGAACAAAGAAATCTTAGCTGTTGTAGAAGCAGTATCAAATGAAAAAGCTGTTCCTCGTGAGCGAATTTTTGAAGCATT
AGAAATCGCGCTTGCAACAGCAACAAAGAAAAAATCTGAAATGGAAATTGAAGTACGTGTAGCGATCGATCGCAAAACAG
GTGACTTCGAAACATTCCGTCGTTGGGTTGCAGTAGAAAACGTTGAAAATCCAACGCTTGAAATTTCTATTGAAGCAGCA
CAGTTTGAAGATGAAACTATCGAAATCGGTGGTTACGTTGAAGATGATATCGAGTCAGTAACATTTGACCGTATTACAAC
TCAAACAGCGAAACAAGTTATCGTACAAAAAGTACGTGAAGCTGAACGTGCAATGATCGTTGAACAGTTTATTGATAATG
AAGGTGAGCTAATCACTGGTATCGTTAAGAAAGTAAACCGTGATGCAATCATCGTAGATCTTGGTAACAACGCTGAAGCG
GTAATTTTACGTGAAGATCAACTTCCACGTGAAAACTTCCGTCCAGGTGACCGTGTTCGTGGTCTGCTATATGCAGTTAA
ACCTGAAGCACGTGGTTTCCAATTATTCATGACACGTTCAAAAGGCGTAATGCTAACTGAACTATTCCGCGTAGAAGTAC
CTGAAATTGGCGAAGAGCTAATTGAATTAAAAGGTGCGGCTCGTGATCCAGGTTCTCGTGCTAAGATCGCAGTTAAAACA
AACGATAAGCGTATTGACCCTGTTGGTGCGTGTGTTGGTATGCGTGGCGCACGTGTACAAGCTGTATCTGGTGAGCTTGG
TGGTGAGCGTATTGATATCGTGCTTTGGGATGATAACCCAGCGCAATTCGTTATCAATGCAATGGCTCCGGCAGAAGTTG
CTTCAATCATTGTTGATGAAGACAACAACACAATGGATATCGCTGTTGAAGCTGATAATCTAGCACAAGCAATTGGCCGT
AGTGGTCAAAACGTACGTTTAGCATCTCAACTTACTGGTTGGGAATTAAACGTAATGACAGTTGCTGATCTTAACAAGAA
GCACCAAGAAGAAGCTCAAGGTTCTATTGATGCATTCGTTAAGCATTTAGATATTGATGCAGACTTTGCTCAGCTATTAG
TTGAAGAAGGTTTCACTACTCTAGAAGAAGTTGCATATGTACCTGTAAATGAACTTCTAGAAATTGAAGAGTTAGATGAA
GATACTGTTGATGCTCTACGTACTCGTGCGAAAGAAGCATTAACAACATTAGCGCTAGCTCAAGAAGAATCATTAGATGG
CGTTGAGCCAGCTGAAGACCTACTTGCTCTTGAAGGCTTAGAGCGTGAGCTTGCTTTCAAACTTGCAGCTAAAGGTGTTA
TTACACTTGAAGACCTTGCAGACCAAGGTGTTGATGAACTGTCTGATATTGAAAATCTAACAGAAGAGCGTGCTGGTGAG
TTAATCATGGCTGCTCGTAATATCTGTTGGTTTAGTGACGAAGAATAA

Upstream 100 bases:

>100_bases
TTGTTACGGTTACAGTTGATGGTAACAATGAAGAATTTGCGTTAAGCAACATTTCAAAGGCGAACTTGGTTCCTAAATTT
TAAGGCTTGAAGAGGCTAAA

Downstream 100 bases:

>100_bases
TAATAGCAAGCAAGGAGAAGCGGTATGACAAAGCTTACGGTAAAAGCACTTAGTGAAGAAATTGGAACTCCAGTTGACCG
CTTACTTCAGCAATTTTCGG

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: L factor; N utilization substance protein A [H]

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRRWVAVENVENPTLEISIEAA
QFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDE
DTVDALRTRAKEALTTLALAQEESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIENLTEERAGE
LIMAARNICWFSDEE

Sequences:

>Translated_495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRRWVAVENVENPTLEISIEAA
QFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDE
DTVDALRTRAKEALTTLALAQEESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIENLTEERAGE
LIMAARNICWFSDEE
>Mature_495_residues
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFRRWVAVENVENPTLEISIEAA
QFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEA
VILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKT
NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDEDNNTMDIAVEADNLAQAIGR
SGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDE
DTVDALRTRAKEALTTLALAQEESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIENLTEERAGE
LIMAARNICWFSDEE

Specific function: Participates in both the termination and antitermination of transcription. NusA binds directly to the core enzyme of the DNA-dependent RNA polymerase. NusA also interacts with lambda N protein, RNA, rho factor, and perhaps nusB. Binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=494, Percent_Identity=79.3522267206478, Blast_Score=791, Evalue=0.0,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010995
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010214
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 54817; Mature: 54817

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHH
RWVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVRE
HHHHHCCCCCCEEEEEEEEECCCCCEEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
AERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVR
HHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHC
GLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKT
EEEEEECCCCCCEEEEEECCCCEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDE
CCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCHHEEEECCCHHHEEEEEEEC
DNNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFV
CCCEEEEEEEHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHCCCHHHHH
KHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALA
HHCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIENLTEERAGE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCHHHHHHHHHHHHHHHCC
LIMAARNICWFSDEE
EEEHHCCCEECCCCC
>Mature Secondary Structure
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAIDRKTGDFETFR
CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCHHHHH
RWVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESVTFDRITTQTAKQVIVQKVRE
HHHHHCCCCCCEEEEEEEEECCCCCEEEECCEECHHHHHHHHHHHHHHHHHHHHHHHHHH
AERAMIVEQFIDNEGELITGIVKKVNRDAIIVDLGNNAEAVILREDQLPRENFRPGDRVR
HHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCHHHC
GLLYAVKPEARGFQLFMTRSKGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKT
EEEEEECCCCCCEEEEEECCCCEEEEHHHHCCCHHHHHHHHHHCCCCCCCCCCCEEEEEC
NDKRIDPVGACVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDE
CCCCCCHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCHHEEEECCCHHHEEEEEEEC
DNNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQEEAQGSIDAFV
CCCEEEEEEEHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEECCCHHHHHHHCCCHHHHH
KHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDEDTVDALRTRAKEALTTLALA
HHCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QEESLDGVEPAEDLLALEGLERELAFKLAAKGVITLEDLADQGVDELSDIENLTEERAGE
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCHHHHHHHHHHHHHHHCC
LIMAARNICWFSDEE
EEEHHCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8113180; 11677609 [H]