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The map label for this gene is yggS [C]

Identifier: 59711037

GI number: 59711037

Start: 458204

End: 458914

Strand: Reverse

Name: yggS [C]

Synonym: VF_0430

Alternate gene names: 59711037

Gene position: 458914-458204 (Counterclockwise)

Preceding gene: 59711040

Following gene: 59711036

Centisome position: 15.84

GC content: 39.94

Gene sequence:

>711_bases
ATGACTAGTATTAAGCAAAATATCAATCAAATCACTCATCAAATAGAGAATAGCATTCAAAAATGTGGTCGAAACCCCGA
TTCAGTGCAATTGCTGGCAGTAAGTAAAACGAAACCTATCGAGTTACTCGAACAAGCGATAGAAGCTGGCCAACGTATTT
TTGGTGAAAACTATGTCCAAGAAGGTATAGAGAAGGTTCAATACTTTCAAAAACAACACTCTACCACTTCTCTTGAGTGG
CATTTCATTGGTCCAATTCAGTCGAATAAAACACGCCCAATTGCAGAACATTTTGATTGGGTTCACTCAGTAGAACGCCT
TAAAATCGCCCAACGTTTAAATGACCAACGCCCTTCCGAACTAGGCGAACTAAATGTACTTATTCAGGTCAATACTAGTT
CAGAAGAGAGTAAATCTGGTACGACAGCAGAAGAAGTAATGGAGCTTGCCGCGGCCATTAATAAAATGCCAAATCTAACC
TTGCGTGGATTAATGTCTATCCCGGCAAATGTCTCTAATTATGCTGAGCAATTAGCGGCATTTAAACAACTTACTTCCAT
TCAAAACCAATTACGAGCACAATACCCTCAAATCGATACCCTATCTATGGGTATGAGTGGTGACATGGACGCTGCAATCG
AAGCAGGTTCAACCATGGTGCGTATTGGTACTGCCATTTTTGGCGCTAGAGATTATAAAAACAAAGAATAA

Upstream 100 bases:

>100_bases
GGAGGAACTCCTGCAGATAGGTGTAGATCTGATGCGTTTTGTTTTACACTAAAGTCCAGTAGTTCTGTGATGTCCATAAT
TTTCCTCGGTAATCGTTTCT

Downstream 100 bases:

>100_bases
TATCTGCTATCAATTTCAAGTAAAACAAATTGATATCATATGCTCACAACAACTAAGGTCTATTGACCCTAAAAGGAATA
GAAATGGAACATCGCAATAT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MTSIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEGIEKVQYFQKQHSTTSLEW
HFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLT
LRGLMSIPANVSNYAEQLAAFKQLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKNKE

Sequences:

>Translated_236_residues
MTSIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEGIEKVQYFQKQHSTTSLEW
HFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLT
LRGLMSIPANVSNYAEQLAAFKQLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKNKE
>Mature_235_residues
TSIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQEGIEKVQYFQKQHSTTSLEWH
FIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSELGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTL
RGLMSIPANVSNYAEQLAAFKQLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKNKE

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=245, Percent_Identity=37.1428571428571, Blast_Score=136, Evalue=1e-32,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=58.7234042553191, Blast_Score=296, Evalue=5e-82,
Organism=Caenorhabditis elegans, GI17533025, Length=218, Percent_Identity=40.8256880733945, Blast_Score=121, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=37.2727272727273, Blast_Score=118, Evalue=1e-27,
Organism=Drosophila melanogaster, GI45550861, Length=214, Percent_Identity=39.2523364485981, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26389; Mature: 26258

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQ
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGIEKVQYFQKQHSTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSE
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
LGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FKQLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKNKE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TSIKQNINQITHQIENSIQKCGRNPDSVQLLAVSKTKPIELLEQAIEAGQRIFGENYVQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGIEKVQYFQKQHSTTSLEWHFIGPIQSNKTRPIAEHFDWVHSVERLKIAQRLNDQRPSE
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
LGELNVLIQVNTSSEESKSGTTAEEVMELAAAINKMPNLTLRGLMSIPANVSNYAEQLAA
CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHH
FKQLTSIQNQLRAQYPQIDTLSMGMSGDMDAAIEAGSTMVRIGTAIFGARDYKNKE
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8982386 [H]