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The map label for this gene is yqgF [C]

Identifier: 59711040

GI number: 59711040

Start: 461218

End: 461643

Strand: Reverse

Name: yqgF [C]

Synonym: VF_0433

Alternate gene names: 59711040

Gene position: 461643-461218 (Counterclockwise)

Preceding gene: 59711041

Following gene: 59711037

Centisome position: 15.93

GC content: 41.08

Gene sequence:

>426_bases
ATGAGTTCACGCACCATTATGGCCTTTGATTTCGGAACCAAGAGTATTGGTTCTGCGATTGGACAAGAAATCACAGGAAC
AGCAAGTCCACTAAAAGCATTTAAAGCTCAAGATGGCACCCCTAATTGGGATGATATTGAAAAACAAATTAAAGAGTGGA
ATCCTGATTTAATCGTTGTTGGTTTGCCAACCGATCTTCACGGTAAAGAGCTCGACACTATTACGCCACGAGCAAAGAAA
TTTGCTAATCGCCTACATGGTCGTTTTGGTAAACAAGTTGAATTGCATGACGAACGCTTATCAACGGCTGAGGCTCGTGC
TGATTTATTCGAATTTGGTGGGTATAAAGCCCTATCAAAAGGCAATATTGACTGTCAGTCTGCTGTAGTTATTTTAGAAA
GTTGGTTTGAGAATCAGTGGGGCTAA

Upstream 100 bases:

>100_bases
CAAGCGTTATTTTCGATACTCCTATTCCTGATCGTTGGCGTAAAGCATTACAACTACTGGGGATTAACCCTGCAAATTTA
TCAAGTGAGATTGGACACGC

Downstream 100 bases:

>100_bases
GAACTAGAAACTAGGGACTAGAACGCTTCGCTCCTATAAGATCAAAAGCAGATATTAAGAGCAGTAATCATTTACGTATT
ACTGCTCTTATAGTTTCTAG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGLPTDLHGKELDTITPRAKK
FANRLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSKGNIDCQSAVVILESWFENQWG

Sequences:

>Translated_141_residues
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGLPTDLHGKELDTITPRAKK
FANRLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSKGNIDCQSAVVILESWFENQWG
>Mature_140_residues
SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVVGLPTDLHGKELDTITPRAKKF
ANRLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSKGNIDCQSAVVILESWFENQWG

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=138, Percent_Identity=65.2173913043478, Blast_Score=191, Evalue=2e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15655; Mature: 15524

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVV
CCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
GLPTDLHGKELDTITPRAKKFANRLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSK
ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCEEECCC
GNIDCQSAVVILESWFENQWG
CCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSRTIMAFDFGTKSIGSAIGQEITGTASPLKAFKAQDGTPNWDDIEKQIKEWNPDLIVV
CCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
GLPTDLHGKELDTITPRAKKFANRLHGRFGKQVELHDERLSTAEARADLFEFGGYKALSK
ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCEEECCC
GNIDCQSAVVILESWFENQWG
CCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA