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The map label for this gene is mshN

Identifier: 59710968

GI number: 59710968

Start: 393036

End: 394181

Strand: Direct

Name: mshN

Synonym: VF_0361

Alternate gene names: NA

Gene position: 393036-394181 (Clockwise)

Preceding gene: 59710967

Following gene: 59710969

Centisome position: 13.56

GC content: 39.09

Gene sequence:

>1146_bases
ATGGAGAGTTTCGTGAGTGTGACTAATAAAGCGTTATTAAATATAACTCGACAAGATGAAAATAAAGAAAAGCAGCACTC
ATTATCTCCTGCGGATATACCGAATGTTGAATCAAAATATAAAGCATCGTTTTTCTTTGCTATCGGTGTACTTAGTTCTT
TGTCGCTAATTGGTTGGTCAACATTAAGTGGATCGACAGAGCAAAATGTAGGGTTGAAAGTGAGTGAGCATACTCAACAA
CAAGCTCTAACGAATGAAGTGAGTGAACACGCTTCGAGCAATATTAAAACAGCTCAATTATCGATTTCACCAACGAAAAA
AGAATCAACATCAGCGGTAAGTTCTATTTATGCTGAGAAGCCATTATCGGTGGATAAGATTGAAGTGACAGCTTCGGTTC
GTAGTCAGTCTACTCAGTATCATTCTGCAGTGGATAAACCACAATTGATAACATCGACAGAGATTGCTAAACCAACATCA
AAGTCGACATCAATTGTTCCTGCAACGTCAAAAGAGCAAGCACAAGCTAATGAAATGTTGCAAGTTGAAGAAGTTGAATT
GTTGCCATCAGAGCTAGCTCATAGAAGTAGAGATGCTGCTAAAAAAGCATTGGATAGATCTGATTTTAAAGCGGCGATGA
AAGAGTATTACACCGTACTTAAGTATCAACCTAGTGATGAAGAGTCACGAAAAAGACTCGCAGCTTTGCTTTATGGTAAA
CGTGATGTAAGTGAAGCAGCGGCCATTCTTCAACAAGGTATAAAGCTTAATGATGACAGTGTAGATCTAAGGTTAGCGTT
GTCGAGTCTATTACAAAAAGAGCAACAGCCAGAAGCAGCTCTTTCTGTATTGGAATATATCCCTGTTGGTGCGTCAGTTG
ATTATCTTGCAACCCGTGGTGGCTTAGCTCAACAGTTGAAGTTGATGGACTTAGCAAAAGAAAGTTATCAGATGTTGGTT
AACCAAGAACCAGATAATGGCCGTTGGTGGTTAGGTTTAGCGATCGTTTATGAAAGAGAAGCAAAAGTAAAATCTGCTTA
TGAGGCATACCAGACAGCATTAATTAAGCCGGGTTTATCTCGCTCGTCTCAAGCGTTTGTTCGTGATCGCATTAAATTAT
TAGCAACAATGGAAGGAATTGAGTAA

Upstream 100 bases:

>100_bases
CAGAGCAAGTGAATAACGTGCCTTCAAAAGCCGTGTTTAACGCCATTATTGATACGGCTGATACTGTTAAACCTAAGCAT
TACTTCCCAACATTTTGGGG

Downstream 100 bases:

>100_bases
TGCGTCTTAAGTTAAGAAAAAGACTTGGTGATCTATTAGTCGAAGAAAACATTGTTACTGAAGAGCAAATCGAACAGGCT
CTTTCGACTCAAAAGAAAAC

Product: MSHA biogenesis protein MshN

Products: NA

Alternate protein names: MSHA Biogenesis Protein MshN; Mannose-Sensitive Agglutinin; TPR Domain-Containing Protein; Type IV Pilus Mannose-Sensitive Hemagglutinin D; Tetratricopeptide Repeat Domain Protein

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MESFVSVTNKALLNITRQDENKEKQHSLSPADIPNVESKYKASFFFAIGVLSSLSLIGWSTLSGSTEQNVGLKVSEHTQQ
QALTNEVSEHASSNIKTAQLSISPTKKESTSAVSSIYAEKPLSVDKIEVTASVRSQSTQYHSAVDKPQLITSTEIAKPTS
KSTSIVPATSKEQAQANEMLQVEEVELLPSELAHRSRDAAKKALDRSDFKAAMKEYYTVLKYQPSDEESRKRLAALLYGK
RDVSEAAAILQQGIKLNDDSVDLRLALSSLLQKEQQPEAALSVLEYIPVGASVDYLATRGGLAQQLKLMDLAKESYQMLV
NQEPDNGRWWLGLAIVYEREAKVKSAYEAYQTALIKPGLSRSSQAFVRDRIKLLATMEGIE

Sequences:

>Translated_381_residues
MESFVSVTNKALLNITRQDENKEKQHSLSPADIPNVESKYKASFFFAIGVLSSLSLIGWSTLSGSTEQNVGLKVSEHTQQ
QALTNEVSEHASSNIKTAQLSISPTKKESTSAVSSIYAEKPLSVDKIEVTASVRSQSTQYHSAVDKPQLITSTEIAKPTS
KSTSIVPATSKEQAQANEMLQVEEVELLPSELAHRSRDAAKKALDRSDFKAAMKEYYTVLKYQPSDEESRKRLAALLYGK
RDVSEAAAILQQGIKLNDDSVDLRLALSSLLQKEQQPEAALSVLEYIPVGASVDYLATRGGLAQQLKLMDLAKESYQMLV
NQEPDNGRWWLGLAIVYEREAKVKSAYEAYQTALIKPGLSRSSQAFVRDRIKLLATMEGIE
>Mature_381_residues
MESFVSVTNKALLNITRQDENKEKQHSLSPADIPNVESKYKASFFFAIGVLSSLSLIGWSTLSGSTEQNVGLKVSEHTQQ
QALTNEVSEHASSNIKTAQLSISPTKKESTSAVSSIYAEKPLSVDKIEVTASVRSQSTQYHSAVDKPQLITSTEIAKPTS
KSTSIVPATSKEQAQANEMLQVEEVELLPSELAHRSRDAAKKALDRSDFKAAMKEYYTVLKYQPSDEESRKRLAALLYGK
RDVSEAAAILQQGIKLNDDSVDLRLALSSLLQKEQQPEAALSVLEYIPVGASVDYLATRGGLAQQLKLMDLAKESYQMLV
NQEPDNGRWWLGLAIVYEREAKVKSAYEAYQTALIKPGLSRSSQAFVRDRIKLLATMEGIE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41991; Mature: 41991

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESFVSVTNKALLNITRQDENKEKQHSLSPADIPNVESKYKASFFFAIGVLSSLSLIGWS
CCHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
TLSGSTEQNVGLKVSEHTQQQALTNEVSEHASSNIKTAQLSISPTKKESTSAVSSIYAEK
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC
PLSVDKIEVTASVRSQSTQYHSAVDKPQLITSTEIAKPTSKSTSIVPATSKEQAQANEML
CCCCCCEEEEEHHHHHCHHHHHHCCCCCEECCHHCCCCCCCCCEEECCCCHHHHHHHHHH
QVEEVELLPSELAHRSRDAAKKALDRSDFKAAMKEYYTVLKYQPSDEESRKRLAALLYGK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
RDVSEAAAILQQGIKLNDDSVDLRLALSSLLQKEQQPEAALSVLEYIPVGASVDYLATRG
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCC
GLAQQLKLMDLAKESYQMLVNQEPDNGRWWLGLAIVYEREAKVKSAYEAYQTALIKPGLS
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCC
RSSQAFVRDRIKLLATMEGIE
CCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MESFVSVTNKALLNITRQDENKEKQHSLSPADIPNVESKYKASFFFAIGVLSSLSLIGWS
CCHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCH
TLSGSTEQNVGLKVSEHTQQQALTNEVSEHASSNIKTAQLSISPTKKESTSAVSSIYAEK
HCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC
PLSVDKIEVTASVRSQSTQYHSAVDKPQLITSTEIAKPTSKSTSIVPATSKEQAQANEML
CCCCCCEEEEEHHHHHCHHHHHHCCCCCEECCHHCCCCCCCCCEEECCCCHHHHHHHHHH
QVEEVELLPSELAHRSRDAAKKALDRSDFKAAMKEYYTVLKYQPSDEESRKRLAALLYGK
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
RDVSEAAAILQQGIKLNDDSVDLRLALSSLLQKEQQPEAALSVLEYIPVGASVDYLATRG
CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHCC
GLAQQLKLMDLAKESYQMLVNQEPDNGRWWLGLAIVYEREAKVKSAYEAYQTALIKPGLS
CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCC
RSSQAFVRDRIKLLATMEGIE
CCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA