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The map label for this gene is gfcE [H]

Identifier: 59710957

GI number: 59710957

Start: 380875

End: 381462

Strand: Reverse

Name: gfcE [H]

Synonym: VF_0350

Alternate gene names: 59710957

Gene position: 381462-380875 (Counterclockwise)

Preceding gene: 59710958

Following gene: 59710956

Centisome position: 13.17

GC content: 39.29

Gene sequence:

>588_bases
ATGAAACCCTTATTTATTTCTTTTTGCCTATTTCTATCTTTTGTTTCTAATGCATTGGCATCTGAAGCTCAAGAAACGCC
TTCTGATACACAAGAAAAAGCAAAAACTGAACAATCCCAACAGAAAGAAGATCTTGGTTATATTTTAGGTGCTGGGGACA
CTATTCAAATTTCAGTTTTCAAAGAACCAGAAATGACCACTCGCCTAAAAATACACCGTGGAGGCTATGTTAATTTCCCT
TACCTTGGTGAAATTAAATTATCTGGTAGAACCCCGACGCAAATTGAAGAAGATATCGAAGCAAGATTAGCTGATGGCTA
TATTCTACAACCAATGGTAACCGTCAGCATTGAAGCATTTCGTAAATTCTTTATCAGTGGTGAAGTGGCAAACCCAAATG
GGTACGAGTTTCAGCCTGGTTTAACTGTTGAGCAAGCTATTGCTATGGCTGGTGGCTTCACAGATAGATCAGATCGAGAT
TCTATAAACGTACGCTCAGCAGCAACAAATGAGTTAATCGAAGATGTGGCTCCAACCTACCCTGTAGGTCCGGGCGATGT
AGTTATCATTGAACAGAGTTTTTTCTAA

Upstream 100 bases:

>100_bases
GGAATTCGATGATTTCACCATTAATTCAGTCGAAACGGTTACTCAAACGTTAGGCTATGATAAATCACTTATTATGTTTA
CAACTAAGGTGCAAATTTAG

Downstream 100 bases:

>100_bases
ATTATGGCACTATCAATTATTGAAAATGGCAAAAAGCTAGAAAGTACAATCGATTTTTCGAACTTTTTAAAAGAGTTTAA
AAAATATCGTCTGCGCGTGC

Product: polysaccharide export periplasmic protein

Products: NA

Alternate protein names: Group 4 capsule protein E homolog [H]

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKPLFISFCLFLSFVSNALASEAQETPSDTQEKAKTEQSQQKEDLGYILGAGDTIQISVFKEPEMTTRLKIHRGGYVNFP
YLGEIKLSGRTPTQIEEDIEARLADGYILQPMVTVSIEAFRKFFISGEVANPNGYEFQPGLTVEQAIAMAGGFTDRSDRD
SINVRSAATNELIEDVAPTYPVGPGDVVIIEQSFF

Sequences:

>Translated_195_residues
MKPLFISFCLFLSFVSNALASEAQETPSDTQEKAKTEQSQQKEDLGYILGAGDTIQISVFKEPEMTTRLKIHRGGYVNFP
YLGEIKLSGRTPTQIEEDIEARLADGYILQPMVTVSIEAFRKFFISGEVANPNGYEFQPGLTVEQAIAMAGGFTDRSDRD
SINVRSAATNELIEDVAPTYPVGPGDVVIIEQSFF
>Mature_195_residues
MKPLFISFCLFLSFVSNALASEAQETPSDTQEKAKTEQSQQKEDLGYILGAGDTIQISVFKEPEMTTRLKIHRGGYVNFP
YLGEIKLSGRTPTQIEEDIEARLADGYILQPMVTVSIEAFRKFFISGEVANPNGYEFQPGLTVEQAIAMAGGFTDRSDRD
SINVRSAATNELIEDVAPTYPVGPGDVVIIEQSFF

Specific function: May be involved in polysaccharide transport [H]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the BexD/CtrA/VexA family [H]

Homologues:

Organism=Escherichia coli, GI1787218, Length=149, Percent_Identity=37.5838926174497, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788376, Length=170, Percent_Identity=32.3529411764706, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715
- InterPro:   IPR019554 [H]

Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 21514; Mature: 21514

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLFISFCLFLSFVSNALASEAQETPSDTQEKAKTEQSQQKEDLGYILGAGDTIQISVF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE
KEPEMTTRLKIHRGGYVNFPYLGEIKLSGRTPTQIEEDIEARLADGYILQPMVTVSIEAF
CCCCCEEEEEEECCCEECCCEEEEEEECCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHH
RKFFISGEVANPNGYEFQPGLTVEQAIAMAGGFTDRSDRDSINVRSAATNELIEDVAPTY
HHHHHCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
PVGPGDVVIIEQSFF
CCCCCCEEEEECCCC
>Mature Secondary Structure
MKPLFISFCLFLSFVSNALASEAQETPSDTQEKAKTEQSQQKEDLGYILGAGDTIQISVF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEE
KEPEMTTRLKIHRGGYVNFPYLGEIKLSGRTPTQIEEDIEARLADGYILQPMVTVSIEAF
CCCCCEEEEEEECCCEECCCEEEEEEECCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHH
RKFFISGEVANPNGYEFQPGLTVEQAIAMAGGFTDRSDRDSINVRSAATNELIEDVAPTY
HHHHHCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCC
PVGPGDVVIIEQSFF
CCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]