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The map label for this gene is rraA [H]

Identifier: 59710818

GI number: 59710818

Start: 234115

End: 234612

Strand: Reverse

Name: rraA [H]

Synonym: VF_0211

Alternate gene names: 59710818

Gene position: 234612-234115 (Counterclockwise)

Preceding gene: 59710819

Following gene: 59710816

Centisome position: 8.1

GC content: 41.57

Gene sequence:

>498_bases
ATGGAATACAATACTTCAGCACTTTGTGACATCTATTTAGATCAAGTTGATGTTGTTGAACCGATGTTCAGCCACTTTGG
CGCTAAGACATCATTTTCAGGTCAAATCACAACAATTAAATGTTTTGAAGATAATGGTCTGATTCATCAACTATTAGAAG
AGAAAGGCGAAGGTCGTGTTTTATTAGTTGATGGCGGCGGTTCTTTACGTCGTGCTTTAGTAGATGCTGACCTAGCAGCA
AAAGCAGCCCACAATGGCTGGGAAGGCTTAGTTATTTATGGTTGCGTCCGTGAAGTGGATTACCTAGAAGAGATTGAGAT
TGGCATTCAAGCTCTCGCTTCTATTCCTGTTGGTGCAGCAAGACAAAACATTGGTGAAGTGGATGTTGCAGTTAACTTTG
GTAGTGTGACTTTCTTACCTGAAGATCATCTTTACGCGGATTCGACTGGAGTGATTATCTCTCAAGAGCCGCTAGAAGAG
ATGGGTGAGGAAGAATAA

Upstream 100 bases:

>100_bases
ACCTAAGTAAATCAGGATAAATTTGCGGTTTGTCATAGTATTGCCTAAAAAAGCACGTATATTGAACAGTTACAAACACC
AATAAAAGGTAAGTTTCACT

Downstream 100 bases:

>100_bases
AAGGGTTAAGGGACGAGAAAGCGAGGTTTCAGGAAGAGCAGAGTTCAGATCGCTGCGCTTGCAGAATTCAGAGGTGAGCG
TTGTTGCTACAGCGACAAAG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKTSFSGQITTIKCFEDNGLIHQLLEEKGEGRVLLVDGGGSLRRALVDADLAA
KAAHNGWEGLVIYGCVREVDYLEEIEIGIQALASIPVGAARQNIGEVDVAVNFGSVTFLPEDHLYADSTGVIISQEPLEE
MGEEE

Sequences:

>Translated_165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKTSFSGQITTIKCFEDNGLIHQLLEEKGEGRVLLVDGGGSLRRALVDADLAA
KAAHNGWEGLVIYGCVREVDYLEEIEIGIQALASIPVGAARQNIGEVDVAVNFGSVTFLPEDHLYADSTGVIISQEPLEE
MGEEE
>Mature_165_residues
MEYNTSALCDIYLDQVDVVEPMFSHFGAKTSFSGQITTIKCFEDNGLIHQLLEEKGEGRVLLVDGGGSLRRALVDADLAA
KAAHNGWEGLVIYGCVREVDYLEEIEIGIQALASIPVGAARQNIGEVDVAVNFGSVTFLPEDHLYADSTGVIISQEPLEE
MGEEE

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=159, Percent_Identity=67.9245283018868, Blast_Score=229, Evalue=6e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17906; Mature: 17906

Theoretical pI: Translated: 3.93; Mature: 3.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNTSALCDIYLDQVDVVEPMFSHFGAKTSFSGQITTIKCFEDNGLIHQLLEEKGEGRV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEE
LLVDGGGSLRRALVDADLAAKAAHNGWEGLVIYGCVREVDYLEEIEIGIQALASIPVGAA
EEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHH
RQNIGEVDVAVNFGSVTFLPEDHLYADSTGVIISQEPLEEMGEEE
HCCCCEEEEEEECCEEEECCCCCEEECCCCEEEECCHHHHCCCCC
>Mature Secondary Structure
MEYNTSALCDIYLDQVDVVEPMFSHFGAKTSFSGQITTIKCFEDNGLIHQLLEEKGEGRV
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCEE
LLVDGGGSLRRALVDADLAAKAAHNGWEGLVIYGCVREVDYLEEIEIGIQALASIPVGAA
EEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCHH
RQNIGEVDVAVNFGSVTFLPEDHLYADSTGVIISQEPLEEMGEEE
HCCCCEEEEEEECCEEEECCCCCEEECCCCEEEECCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA