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The map label for this gene is yrbC [H]

Identifier: 172087659

GI number: 172087659

Start: 429153

End: 429794

Strand: Direct

Name: yrbC [H]

Synonym: VF_0397

Alternate gene names: 172087659

Gene position: 429153-429794 (Clockwise)

Preceding gene: 59711003

Following gene: 59711006

Centisome position: 14.81

GC content: 34.89

Gene sequence:

>642_bases
ATGAAACAGTGGATAAGTGCAGTTATAGTCGTAATTTGTTTTTTTTCATCAGCGATTAATGCTCAAGAGATAGATAAAAC
AAAACCTTATGAAATGATGGCACAAGTATCTGAAATTACTTTTGCTCGATTAAAATCAGAGCAGAGTGCAATAAAAACGG
ATCCAAATATTTTAAAAACGGTCGTTGATGAAGAGTTAATGCCGTATGTAAATGTAAAATATGCAGCTTACAAATTATTA
GGGACACACTTAAAGAAAACTACACCAGAAGAGCGAGCAGAGTTTGTTACTGCTTTTCGTGATTATTTAGTTTCTTCTTA
TGCTCAAGTTTTAACACTATACACTGATCAAAAAATCGTATTGGAAAAAGCGAAAAAAATACCGGAAGGAAAAAGAATCA
TCAGTGTTCGTGTTGATATCTTAGATTCAGCTCGTCCAACCGTAAAAGTTGATTTCAAACTACGTAAGAATAAAAAGACA
GGGGAATGGCAGGCCTTTGATATGGTTGCTGAAGGAGTAAGTCTTCTTTCTACTAAGCAGTCTGAGTGGAATGGTAAAAT
ACGTAAAGAAGGCATTAGCTCGGTAAGTGCTGAGTTACACTCTTTAGCTAAGCAACCGATTCGATTAGAAGGCAATAAAT
AA

Upstream 100 bases:

>100_bases
TTATTGAAGATACCAAATCGGCATTAGTATTAGAGGATATGATCGGGCAAGTGCTATACAGCATTGGTGGTGATTCGTCA
GAAGCAAGTGAGGAAGAGTA

Downstream 100 bases:

>100_bases
TGCCTGTTATCGATTTATGTGTAACCAAAGTTGATGAAATAAGCTTCAAAGGTGCTCTTGATCGTGAGACTGTGCCTAAT
ATTTGGAATAAATTGACAAA

Product: organic solvent ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKQWISAVIVVICFFSSAINAQEIDKTKPYEMMAQVSEITFARLKSEQSAIKTDPNILKTVVDEELMPYVNVKYAAYKLL
GTHLKKTTPEERAEFVTAFRDYLVSSYAQVLTLYTDQKIVLEKAKKIPEGKRIISVRVDILDSARPTVKVDFKLRKNKKT
GEWQAFDMVAEGVSLLSTKQSEWNGKIRKEGISSVSAELHSLAKQPIRLEGNK

Sequences:

>Translated_213_residues
MKQWISAVIVVICFFSSAINAQEIDKTKPYEMMAQVSEITFARLKSEQSAIKTDPNILKTVVDEELMPYVNVKYAAYKLL
GTHLKKTTPEERAEFVTAFRDYLVSSYAQVLTLYTDQKIVLEKAKKIPEGKRIISVRVDILDSARPTVKVDFKLRKNKKT
GEWQAFDMVAEGVSLLSTKQSEWNGKIRKEGISSVSAELHSLAKQPIRLEGNK
>Mature_213_residues
MKQWISAVIVVICFFSSAINAQEIDKTKPYEMMAQVSEITFARLKSEQSAIKTDPNILKTVVDEELMPYVNVKYAAYKLL
GTHLKKTTPEERAEFVTAFRDYLVSSYAQVLTLYTDQKIVLEKAKKIPEGKRIISVRVDILDSARPTVKVDFKLRKNKKT
GEWQAFDMVAEGVSLLSTKQSEWNGKIRKEGISSVSAELHSLAKQPIRLEGNK

Specific function: Actively prevents phospholipid accumulation at the cell surface. Probably maintains lipid asymmetry in the outer membrane by retrograde trafficking of phospholipids from the outer membrane to the inner membrane. May transfer phospholipid across the peripl

COG id: COG2854

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, auxiliary component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaC/ttg2D family [H]

Homologues:

Organism=Escherichia coli, GI1789583, Length=215, Percent_Identity=43.7209302325581, Blast_Score=190, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023094
- InterPro:   IPR008869 [H]

Pfam domain/function: PF05494 Tol_Tol_Ttg2 [H]

EC number: NA

Molecular weight: Translated: 24161; Mature: 24161

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQWISAVIVVICFFSSAINAQEIDKTKPYEMMAQVSEITFARLKSEQSAIKTDPNILKT
CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VVDEELMPYVNVKYAAYKLLGTHLKKTTPEERAEFVTAFRDYLVSSYAQVLTLYTDQKIV
HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LEKAKKIPEGKRIISVRVDILDSARPTVKVDFKLRKNKKTGEWQAFDMVAEGVSLLSTKQ
HHHHHCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
SEWNGKIRKEGISSVSAELHSLAKQPIRLEGNK
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKQWISAVIVVICFFSSAINAQEIDKTKPYEMMAQVSEITFARLKSEQSAIKTDPNILKT
CHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VVDEELMPYVNVKYAAYKLLGTHLKKTTPEERAEFVTAFRDYLVSSYAQVLTLYTDQKIV
HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LEKAKKIPEGKRIISVRVDILDSARPTVKVDFKLRKNKKTGEWQAFDMVAEGVSLLSTKQ
HHHHHCCCCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCC
SEWNGKIRKEGISSVSAELHSLAKQPIRLEGNK
HHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]