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The map label for this gene is yrbD [C]

Identifier: 59711003

GI number: 59711003

Start: 428659

End: 429153

Strand: Direct

Name: yrbD [C]

Synonym: VF_0396

Alternate gene names: 59711003

Gene position: 428659-429153 (Clockwise)

Preceding gene: 59711002

Following gene: 172087659

Centisome position: 14.79

GC content: 38.99

Gene sequence:

>495_bases
ATGCAACAGACACGTAAAGTAGAATTTTTTGTTGGCCTTTTTGTATTAGCAGGAATGGCCGCTCTACTGATGTTATTACT
TAAGGTTGCGGATGTTCGCAGTGGTGGTAGTGGCGAGTATTACACCCTAAATGCTCAATTTGATAACATCGGAAGTTTAA
AATCACGCTCACCAGTAAAAGTAGGTGGTGTTGTTATTGGTCGTGTAGATAACATTACTCTTGATAAAGAGAGTTATTTA
CCTATCGTCAGTATGCAAATAGATAAGCAGTTTGGTTCGTTTCCTGAAACCTCTGCGGCTCAGATTTTAACGTCGGGTTT
AATTGGCGAGCAATACATTGGGATTGTTCCTGGTTTTATTGATGAAGATATTGATATGTTAGGTAATGGTGATTTTATTG
AAGATACCAAATCGGCATTAGTATTAGAGGATATGATCGGGCAAGTGCTATACAGCATTGGTGGTGATTCGTCAGAAGCA
AGTGAGGAAGAGTAA

Upstream 100 bases:

>100_bases
AGGTATTTCATTGGCAACGACACGTACAGTAGTGCACTCTTCGTTGGCGGTATTAGGTATTGATTTTGTGCTTACGGCAC
TGATGTTTGGGAACTAAATT

Downstream 100 bases:

>100_bases
TGAAACAGTGGATAAGTGCAGTTATAGTCGTAATTTGTTTTTTTTCATCAGCGATTAATGCTCAAGAGATAGATAAAACA
AAACCTTATGAAATGATGGC

Product: organic solvent ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 164

Protein sequence:

>164_residues
MQQTRKVEFFVGLFVLAGMAALLMLLLKVADVRSGGSGEYYTLNAQFDNIGSLKSRSPVKVGGVVIGRVDNITLDKESYL
PIVSMQIDKQFGSFPETSAAQILTSGLIGEQYIGIVPGFIDEDIDMLGNGDFIEDTKSALVLEDMIGQVLYSIGGDSSEA
SEEE

Sequences:

>Translated_164_residues
MQQTRKVEFFVGLFVLAGMAALLMLLLKVADVRSGGSGEYYTLNAQFDNIGSLKSRSPVKVGGVVIGRVDNITLDKESYL
PIVSMQIDKQFGSFPETSAAQILTSGLIGEQYIGIVPGFIDEDIDMLGNGDFIEDTKSALVLEDMIGQVLYSIGGDSSEA
SEEE
>Mature_164_residues
MQQTRKVEFFVGLFVLAGMAALLMLLLKVADVRSGGSGEYYTLNAQFDNIGSLKSRSPVKVGGVVIGRVDNITLDKESYL
PIVSMQIDKQFGSFPETSAAQILTSGLIGEQYIGIVPGFIDEDIDMLGNGDFIEDTKSALVLEDMIGQVLYSIGGDSSEA
SEEE

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=161, Percent_Identity=51.5527950310559, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 17653; Mature: 17653

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQTRKVEFFVGLFVLAGMAALLMLLLKVADVRSGGSGEYYTLNAQFDNIGSLKSRSPVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEE
VGGVVIGRVDNITLDKESYLPIVSMQIDKQFGSFPETSAAQILTSGLIGEQYIGIVPGFI
ECCEEEECCCCEEECCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
DEDIDMLGNGDFIEDTKSALVLEDMIGQVLYSIGGDSSEASEEE
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQQTRKVEFFVGLFVLAGMAALLMLLLKVADVRSGGSGEYYTLNAQFDNIGSLKSRSPVK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCEE
VGGVVIGRVDNITLDKESYLPIVSMQIDKQFGSFPETSAAQILTSGLIGEQYIGIVPGFI
ECCEEEECCCCEEECCCCCCCEEEEEECHHHCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
DEDIDMLGNGDFIEDTKSALVLEDMIGQVLYSIGGDSSEASEEE
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]