| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is wbfB [H]
Identifier: 172087642
GI number: 172087642
Start: 175293
End: 177545
Strand: Reverse
Name: wbfB [H]
Synonym: VF_0157
Alternate gene names: 172087642
Gene position: 177545-175293 (Counterclockwise)
Preceding gene: 59710765
Following gene: 59710759
Centisome position: 6.13
GC content: 41.77
Gene sequence:
>2253_bases ATGATGACTCCAAAGTTTTCTTTATCTCTTATTGCGGGGGTTATTGCTTCTGCTTTGCCTTATTCAACCTTTGCTACAGA TCATTCTGTTGCAAACCAATCTATTGAAGATCAGTCGGCTGTAAATAAAGTCAGTAATACAGTTTTTGACCCAGTAGTGT TAACCCCATCTCAAACGGATTTTGGTGGTGTTGGCCTAATGCAAATGCCTTCTGGTCGTATGGCTCCTGAAGGGGAATTT AATATTGGTGCAAGCATTAATAATGAATACCACCACTACAACGTTTCTTTGCAAGTCATGCCATGGTTAGAAACCACTAT CCGCTATACCTTGGTTCAAGATTTACTTTATAGCAGCGATGAAAGTTTTAGTGGCAGAACAAAATACACGGATAAAGGCA TCGATTTTAAGATTCGTTTACTTGAAGAGAGTAAATGGTTGCCGGAGACCTCTGTTGGGGTTCGTGATTTTGGTGGTACT GGGTTGTTTGATGGCGAGTTTGTAGCAGCAACCAAACGCTTTGGTAATCTTGATGTTACCCTTGGTATGGGTTGGGGTTA CTTAGGACAAAGTGGCAATATTACTAACCCTTTTTGCAAAGCTTCGGACAAATTCTGCTCTCGCCAAGGTGATTACAAAG GCAAAGGTGGCAGTGTTGATTTTGAACGTTGGTTTAAAGGCCCAGCAGCCATTTATGGTGGTATCGAGTACCAAACGCCT TATCAGCCACTTCGTTTAAAAGTAGAATACGACAGTAACGATTATAGCCAAGACTTCCCTGTAACTCGTGGTAATGTGGA TATGACACAACACACCCCTTGGAACTTTGGTGTGCTGTATGGCCTAGGAGATTGGGGCGATATTAAAGTCAGTTACCAAC GTGGTGATACCTTAACCCTTGGTGTGAACCTAACTACTAATTTTAATGATATGAAAGCGATTTGGCGTGATGAGCCTATT ACGGCTTATGACGAATCAAGCAATCAATCAATTGATGAAGTGGATTGGCAACGAGTTAACCAACAACTGAATGGCAACGC CGGTTATGAAGACAACCGAATTTATGCCGACGATGATTCTGTCACTCTTGTTGCGACCCAAACGAAATATCGTGATAGCG ATGAGGCGCATGATCGTGCTTCACGTATTTTTGCAAATCATGTACCTGAGACAATTTCTACGTACCGAATTATTGAAACC AATCAATCTATGCCTGTTTCTGAAACGCTGATTGATGCGGCTCAATATAAAAAGGTGGCTAATAATGAATATTTTGATGC CAAGGTAGCTGATGCAAGTCAAACTGATGAAGTGACTTATTCGCCATCAGAACATTCGCTTAAAAGTGATAATTTAGATC GCTGGGATTACTCTGTTTCTCCTACTTTATCTCAATCTATTGGTAGTGCTGAAAGCTTTTATCTTTATGCGGTTGGTATT AATACCGCAGGTTCGGTGTGGTTAACTGACAAGGTTCAGGCTTCGGGCAGTTTGTATTTTAATCTGTTTGATAACTACGA TAAGTTTAATTACATCACGCCTCCAGATGGTACGTCGGTTCCTCGTGTTCGCACTATGTTCCGTGCTTATGTTCATGAAA ACCCAGTTCGTATGAATAACCTACAATTAACCTGGTTTGAAGAATATGGCGCTGGTTTTTATAGCCAAATGTACGCTGGC TATCTAGAAAGTATGTTTGGTGGTATTGGTTCAGAAGTGATGTACCGCCCATTAAACTCGAATTGGGCATTTGGTATTGA TGCGACGTATATTAAACAACGTACACCTGGTGATTGGTTTGGGTTCTACGAACAAGATCATCAAGAAGGCGGTGATTATG GACGTGACTATACCGTAGTTTCTAGCGGAGTGACTGGGTTTGCGACCGCTTATTATGCCCCTCAATGGTCTTTCTTGAAG AACACCTTACTTAAAGTGGGTGTTGGTCAGTTCTTAGCTGGCGATAAAGGAACTCGCATTGATTTCTCGAAACAATTCGA TTCAGGTGTGATTGCTGGTGCTTACGCAAGCTTTACGGATTTATCTGCTGAAGAGTTTGGTGAAGGCAGCTACACCAAAG GATTCTATATCTCGATTCCTTTCGACATTATGACGGTGAAACCAAGTAAGAACCGTGCAAACTTTAACTGGCAACCTCTG ACTCGCGATGGCGGTCAAATGTTGAATAAGCAGCATGATTTGTATGAATTGACGGATGAGCGTTCACCGTGGTTTACGAG AAAAGGGCTTTGA
Upstream 100 bases:
>100_bases GGGGGCATCGGTGTATATCCCTCTTGGCGGATTACCAAGTGATTTTTCATCTTTAAACACCTCTATTGTTCAACTGCTTC GTAATAAGGCGCTGTAATTT
Downstream 100 bases:
>100_bases GGGGTTAAGGGATTAGGGACGAGTAAGAGCAGGGACTAGGGACTAGAAGCAAGAGCTAGGAGCAAGGGTATATTGCTCTT AGTCTTTTGACCTCCTCAAG
Product: WbfB protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MMTPKFSLSLIAGVIASALPYSTFATDHSVANQSIEDQSAVNKVSNTVFDPVVLTPSQTDFGGVGLMQMPSGRMAPEGEF NIGASINNEYHHYNVSLQVMPWLETTIRYTLVQDLLYSSDESFSGRTKYTDKGIDFKIRLLEESKWLPETSVGVRDFGGT GLFDGEFVAATKRFGNLDVTLGMGWGYLGQSGNITNPFCKASDKFCSRQGDYKGKGGSVDFERWFKGPAAIYGGIEYQTP YQPLRLKVEYDSNDYSQDFPVTRGNVDMTQHTPWNFGVLYGLGDWGDIKVSYQRGDTLTLGVNLTTNFNDMKAIWRDEPI TAYDESSNQSIDEVDWQRVNQQLNGNAGYEDNRIYADDDSVTLVATQTKYRDSDEAHDRASRIFANHVPETISTYRIIET NQSMPVSETLIDAAQYKKVANNEYFDAKVADASQTDEVTYSPSEHSLKSDNLDRWDYSVSPTLSQSIGSAESFYLYAVGI NTAGSVWLTDKVQASGSLYFNLFDNYDKFNYITPPDGTSVPRVRTMFRAYVHENPVRMNNLQLTWFEEYGAGFYSQMYAG YLESMFGGIGSEVMYRPLNSNWAFGIDATYIKQRTPGDWFGFYEQDHQEGGDYGRDYTVVSSGVTGFATAYYAPQWSFLK NTLLKVGVGQFLAGDKGTRIDFSKQFDSGVIAGAYASFTDLSAEEFGEGSYTKGFYISIPFDIMTVKPSKNRANFNWQPL TRDGGQMLNKQHDLYELTDERSPWFTRKGL
Sequences:
>Translated_750_residues MMTPKFSLSLIAGVIASALPYSTFATDHSVANQSIEDQSAVNKVSNTVFDPVVLTPSQTDFGGVGLMQMPSGRMAPEGEF NIGASINNEYHHYNVSLQVMPWLETTIRYTLVQDLLYSSDESFSGRTKYTDKGIDFKIRLLEESKWLPETSVGVRDFGGT GLFDGEFVAATKRFGNLDVTLGMGWGYLGQSGNITNPFCKASDKFCSRQGDYKGKGGSVDFERWFKGPAAIYGGIEYQTP YQPLRLKVEYDSNDYSQDFPVTRGNVDMTQHTPWNFGVLYGLGDWGDIKVSYQRGDTLTLGVNLTTNFNDMKAIWRDEPI TAYDESSNQSIDEVDWQRVNQQLNGNAGYEDNRIYADDDSVTLVATQTKYRDSDEAHDRASRIFANHVPETISTYRIIET NQSMPVSETLIDAAQYKKVANNEYFDAKVADASQTDEVTYSPSEHSLKSDNLDRWDYSVSPTLSQSIGSAESFYLYAVGI NTAGSVWLTDKVQASGSLYFNLFDNYDKFNYITPPDGTSVPRVRTMFRAYVHENPVRMNNLQLTWFEEYGAGFYSQMYAG YLESMFGGIGSEVMYRPLNSNWAFGIDATYIKQRTPGDWFGFYEQDHQEGGDYGRDYTVVSSGVTGFATAYYAPQWSFLK NTLLKVGVGQFLAGDKGTRIDFSKQFDSGVIAGAYASFTDLSAEEFGEGSYTKGFYISIPFDIMTVKPSKNRANFNWQPL TRDGGQMLNKQHDLYELTDERSPWFTRKGL >Mature_750_residues MMTPKFSLSLIAGVIASALPYSTFATDHSVANQSIEDQSAVNKVSNTVFDPVVLTPSQTDFGGVGLMQMPSGRMAPEGEF NIGASINNEYHHYNVSLQVMPWLETTIRYTLVQDLLYSSDESFSGRTKYTDKGIDFKIRLLEESKWLPETSVGVRDFGGT GLFDGEFVAATKRFGNLDVTLGMGWGYLGQSGNITNPFCKASDKFCSRQGDYKGKGGSVDFERWFKGPAAIYGGIEYQTP YQPLRLKVEYDSNDYSQDFPVTRGNVDMTQHTPWNFGVLYGLGDWGDIKVSYQRGDTLTLGVNLTTNFNDMKAIWRDEPI TAYDESSNQSIDEVDWQRVNQQLNGNAGYEDNRIYADDDSVTLVATQTKYRDSDEAHDRASRIFANHVPETISTYRIIET NQSMPVSETLIDAAQYKKVANNEYFDAKVADASQTDEVTYSPSEHSLKSDNLDRWDYSVSPTLSQSIGSAESFYLYAVGI NTAGSVWLTDKVQASGSLYFNLFDNYDKFNYITPPDGTSVPRVRTMFRAYVHENPVRMNNLQLTWFEEYGAGFYSQMYAG YLESMFGGIGSEVMYRPLNSNWAFGIDATYIKQRTPGDWFGFYEQDHQEGGDYGRDYTVVSSGVTGFATAYYAPQWSFLK NTLLKVGVGQFLAGDKGTRIDFSKQFDSGVIAGAYASFTDLSAEEFGEGSYTKGFYISIPFDIMTVKPSKNRANFNWQPL TRDGGQMLNKQHDLYELTDERSPWFTRKGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ymcA [H]
Homologues:
Organism=Escherichia coli, GI1790461, Length=695, Percent_Identity=46.7625899280576, Blast_Score=636, Evalue=0.0, Organism=Escherichia coli, GI1787219, Length=712, Percent_Identity=43.9606741573034, Blast_Score=596, Evalue=1e-171,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010344 [H]
Pfam domain/function: PF06082 DUF940 [H]
EC number: NA
Molecular weight: Translated: 84211; Mature: 84211
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMTPKFSLSLIAGVIASALPYSTFATDHSVANQSIEDQSAVNKVSNTVFDPVVLTPSQTD CCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCC FGGVGLMQMPSGRMAPEGEFNIGASINNEYHHYNVSLQVMPWLETTIRYTLVQDLLYSSD CCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCC ESFSGRTKYTDKGIDFKIRLLEESKWLPETSVGVRDFGGTGLFDGEFVAATKRFGNLDVT CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE LGMGWGYLGQSGNITNPFCKASDKFCSRQGDYKGKGGSVDFERWFKGPAAIYGGIEYQTP EECCCCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCEECCEECCCC YQPLRLKVEYDSNDYSQDFPVTRGNVDMTQHTPWNFGVLYGLGDWGDIKVSYQRGDTLTL CCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEE GVNLTTNFNDMKAIWRDEPITAYDESSNQSIDEVDWQRVNQQLNGNAGYEDNRIYADDDS EEEEECCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCC VTLVATQTKYRDSDEAHDRASRIFANHVPETISTYRIIETNQSMPVSETLIDAAQYKKVA EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHC NNEYFDAKVADASQTDEVTYSPSEHSLKSDNLDRWDYSVSPTLSQSIGSAESFYLYAVGI CCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEE NTAGSVWLTDKVQASGSLYFNLFDNYDKFNYITPPDGTSVPRVRTMFRAYVHENPVRMNN CCCCCEEEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCEECC LQLTWFEEYGAGFYSQMYAGYLESMFGGIGSEVMYRPLNSNWAFGIDATYIKQRTPGDWF EEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCEEECCCHHEECCCCCCCCC GFYEQDHQEGGDYGRDYTVVSSGVTGFATAYYAPQWSFLKNTLLKVGVGQFLAGDKGTRI CCCCHHHHCCCCCCCCEEEEECCCCHHEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCEE DFSKQFDSGVIAGAYASFTDLSAEEFGEGSYTKGFYISIPFDIMTVKPSKNRANFNWQPL EEHHCCCCCEEEECHHHHHCCCHHHCCCCCCCCCEEEEECEEEEEECCCCCCCCCCEECC TRDGGQMLNKQHDLYELTDERSPWFTRKGL CCCCHHHHCCCCCHHHHCCCCCCCEECCCC >Mature Secondary Structure MMTPKFSLSLIAGVIASALPYSTFATDHSVANQSIEDQSAVNKVSNTVFDPVVLTPSQTD CCCCCHHHHHHHHHHHHHCCCCHHCCCHHHHCCCCHHHHHHHHHHHHHCCCEEECCCCCC FGGVGLMQMPSGRMAPEGEFNIGASINNEYHHYNVSLQVMPWLETTIRYTLVQDLLYSSD CCCEEEEECCCCCCCCCCCEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHCCC ESFSGRTKYTDKGIDFKIRLLEESKWLPETSVGVRDFGGTGLFDGEFVAATKRFGNLDVT CCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEE LGMGWGYLGQSGNITNPFCKASDKFCSRQGDYKGKGGSVDFERWFKGPAAIYGGIEYQTP EECCCCCCCCCCCCCCHHHHCCHHHHHCCCCCCCCCCCCCHHHHCCCCCCEECCEECCCC YQPLRLKVEYDSNDYSQDFPVTRGNVDMTQHTPWNFGVLYGLGDWGDIKVSYQRGDTLTL CCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEEEEEECCCEEEE GVNLTTNFNDMKAIWRDEPITAYDESSNQSIDEVDWQRVNQQLNGNAGYEDNRIYADDDS EEEEECCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCC VTLVATQTKYRDSDEAHDRASRIFANHVPETISTYRIIETNQSMPVSETLIDAAQYKKVA EEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCHHHHHHHHHHHHHHC NNEYFDAKVADASQTDEVTYSPSEHSLKSDNLDRWDYSVSPTLSQSIGSAESFYLYAVGI CCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEEEE NTAGSVWLTDKVQASGSLYFNLFDNYDKFNYITPPDGTSVPRVRTMFRAYVHENPVRMNN CCCCCEEEEEEEECCCEEEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHHCCCCEECC LQLTWFEEYGAGFYSQMYAGYLESMFGGIGSEVMYRPLNSNWAFGIDATYIKQRTPGDWF EEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCEEECCCHHEECCCCCCCCC GFYEQDHQEGGDYGRDYTVVSSGVTGFATAYYAPQWSFLKNTLLKVGVGQFLAGDKGTRI CCCCHHHHCCCCCCCCEEEEECCCCHHEEEEECCCHHHHHHHHHHHCCHHHHCCCCCCEE DFSKQFDSGVIAGAYASFTDLSAEEFGEGSYTKGFYISIPFDIMTVKPSKNRANFNWQPL EEHHCCCCCEEEECHHHHHCCCHHHCCCCCCCCCEEEEECEEEEEECCCCCCCCCCEECC TRDGGQMLNKQHDLYELTDERSPWFTRKGL CCCCHHHHCCCCCHHHHCCCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]