Click here to switch to the map view.

The map label for this gene is yidZ [H]

Identifier: 172087633

GI number: 172087633

Start: 47933

End: 48898

Strand: Reverse

Name: yidZ [H]

Synonym: VF_0040

Alternate gene names: 172087633

Gene position: 48898-47933 (Counterclockwise)

Preceding gene: 59710650

Following gene: 59710645

Centisome position: 1.69

GC content: 37.27

Gene sequence:

>966_bases
ATGTTTTTCGAAAAACTGGCAAAGATTGATCTTAATCTTCTTCTTACGCTTCATTTATTATTAGAAGAAAAAAGTGTCAC
CCGTGCTGCTCAACGTTTGTGCTTAAGCCAATCTGCCGTAAGTAAAAACTTAGCGAAATTACGCGAACAATTTAACGATC
CGCTTTTCTCTCGCACATCTTATGGTTTGCAGCCCACGGCGAAAGCACGAAACCTTCAAGAACAACTACATACGTTATTA
AGCCACTTAGAAAGCATCACTGAAGCATCAAATTTTGATCCTAAAAGCAGTCATTATCGATTTCGCTTAGGTTTGGTTGA
AAGTACTTATCCATTACTGCTTCCACACTTCATGTCATATATTTTAAATAAAGCCCCCAATGTCATGTTAGATACTCATG
CATGGGATACCAACACATTAAAGAAACTTCAATCCGGTGAAATGGATATAGGTATTACAGGTAAAGACCTCGACCCAAAA
TACGCCAATATCACTATGCATACGCCTGAAGATATTTGCAGCAAAGAAATTTATCGAGATAGTCAAATGTGTTTGGTTCG
CCGTAATCATCCTGTATTAAAACAAGAATGGACGTTAGACACTTACCTTCAACAACGTCATGTACAAGTTCGCTGTGATG
GTAAAGACCAATGGTTGCTTGATTACAAATTAGCAGACAGAGGACTCGAACGTAGTATCGGTATTATTGTACCTGATTTT
AATAGTGCTGCGAGCTTATGTACTCATACCGATTTAGTTTTCACAGCACCAAGCCACTTTATAAAATTAATAGCCGAACA
ACTTAACTTAGTTGTATTACCCTTGCCTACAGACTTACCTCAAATGGCATACACCCTATTTTGGCATCAACAAAAAGAGA
ATGATGCGGCAAATTGTTGGCTTCGAAATACCATAATTAATCACTGTAAAGATTTATCAATATCAACAATTGCAGATGAA
CACTAA

Upstream 100 bases:

>100_bases
CATTGATAACTCCTAAAATGATTCGAGGAGTGTACTCAATTAGAGATATGAACAGAAATGGTTTATATTCAGATCTAACA
TTCTTATTTGGAATATCTCT

Downstream 100 bases:

>100_bases
AAGCGCTAGGTTATAACTCTACAAAAAACATAACTAATTTCTTTCTGCCTCGTACACACGGACAGAGTCATACCAATTAA
TCACAGGTATAAAAGGACAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQFNDPLFSRTSYGLQPTAKARNLQEQLHTLL
SHLESITEASNFDPKSSHYRFRLGLVESTYPLLLPHFMSYILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPK
YANITMHTPEDICSKEIYRDSQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQWLLDYKLADRGLERSIGIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAEQLNLVVLPLPTDLPQMAYTLFWHQQKENDAANCWLRNTIINHCKDLSISTIADE
H

Sequences:

>Translated_321_residues
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQFNDPLFSRTSYGLQPTAKARNLQEQLHTLL
SHLESITEASNFDPKSSHYRFRLGLVESTYPLLLPHFMSYILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPK
YANITMHTPEDICSKEIYRDSQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQWLLDYKLADRGLERSIGIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAEQLNLVVLPLPTDLPQMAYTLFWHQQKENDAANCWLRNTIINHCKDLSISTIADE
H
>Mature_321_residues
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQFNDPLFSRTSYGLQPTAKARNLQEQLHTLL
SHLESITEASNFDPKSSHYRFRLGLVESTYPLLLPHFMSYILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPK
YANITMHTPEDICSKEIYRDSQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQWLLDYKLADRGLERSIGIIVPDF
NSAASLCTHTDLVFTAPSHFIKLIAEQLNLVVLPLPTDLPQMAYTLFWHQQKENDAANCWLRNTIINHCKDLSISTIADE
H

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=303, Percent_Identity=32.3432343234323, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI87081684, Length=311, Percent_Identity=29.2604501607717, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI87081766, Length=276, Percent_Identity=25.7246376811594, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786820, Length=86, Percent_Identity=41.8604651162791, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789204, Length=250, Percent_Identity=24.8, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36898; Mature: 36898

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQFNDPLFSRTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
YGLQPTAKARNLQEQLHTLLSHLESITEASNFDPKSSHYRFRLGLVESTYPLLLPHFMSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
ILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPKYANITMHTPEDICSKEIYRD
HHCCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECHHHHHHHHHHCC
SQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQWLLDYKLADRGLERSIGIIVPDF
CHHEEEECCCCCCHHCCCHHHHHHHCCEEEEECCCCCEEEEHHHHHCCCCCCCCEEEECC
NSAASLCTHTDLVFTAPSHFIKLIAEQLNLVVLPLPTDLPQMAYTLFWHQQKENDAANCW
CCHHHHHHHCCEEEECHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHH
LRNTIINHCKDLSISTIADEH
HHHHHHHHHCCCCCHHCCCCC
>Mature Secondary Structure
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQFNDPLFSRTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
YGLQPTAKARNLQEQLHTLLSHLESITEASNFDPKSSHYRFRLGLVESTYPLLLPHFMSY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHH
ILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPKYANITMHTPEDICSKEIYRD
HHCCCCCEEEECCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEEEECHHHHHHHHHHCC
SQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQWLLDYKLADRGLERSIGIIVPDF
CHHEEEECCCCCCHHCCCHHHHHHHCCEEEEECCCCCEEEEHHHHHCCCCCCCCEEEECC
NSAASLCTHTDLVFTAPSHFIKLIAEQLNLVVLPLPTDLPQMAYTLFWHQQKENDAANCW
CCHHHHHHHCCEEEECHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHH
LRNTIINHCKDLSISTIADEH
HHHHHHHHHCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA