| Definition | Ehrlichia ruminantium str. Gardel, complete genome. |
|---|---|
| Accession | NC_006831 |
| Length | 1,499,920 |
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The map label for this gene is rho [H]
Identifier: 58617527
GI number: 58617527
Start: 1281574
End: 1282950
Strand: Reverse
Name: rho [H]
Synonym: ERGA_CDS_08000
Alternate gene names: 58617527
Gene position: 1282950-1281574 (Counterclockwise)
Preceding gene: 58617532
Following gene: 58617525
Centisome position: 85.53
GC content: 34.57
Gene sequence:
>1377_bases ATGTTGGAATCAGAAGATATTCTTTTAATGAAGGAAGAGGAAGTAATAGAGGGTATACAAAGTGAAGAAGAGGTTAAGGT ACCTGAGGATAAAGGAGGAGAGGTTAAGGTATTAGATTTAAGTGAATTAAAGAAGAAGAGTATAGAGGATCTGCTAAAGA TAGCAGAGGAGCTGGGTGTGGTCAGTAATGGAAGGATGCTAAAACAGGAAATAATATTTCACTTAATGAAAAAAGTAGTA AATGATGGAGGAGCTGCAATAGGAGGTGGGGTAGTAGAGATATTATCCGATGGCTTTGGATTTTTAAGATCTCCTGAAGC AAATTATGCTGCTAGTAGTGATGATGTATATATTTCAGCAGGACAAATAAAGAAATTTAATTTAAGGACTGGTGATATAG TAAGTGGGGAGATTAGAGCTCCAAGTGAGAAAGAAAGATATTTTACATTAGTAAAGGCACATAGCATTAACTTTACAGAT ATGGGGAAGCTACAAAGATATGTGCATTTTGATGACCTAATACCTTTATATCCGGAAGAAAGGATACTATTAGAATGCAA TGACCCTATAAGCTTAAGTAAGAAAGATATAAGCATGAGAGTAATAGATATAGTAGCACCATTAGGTAAAGGACAGAGGG CATTGATAGTTGCGCCGCCAAGGGCTGGGAAAACAATAATATTACAGCAAATAGCGCATTCAATATCTGTAAATCATCCA GATATTGAATTAATAGTATTATTAATCGGTGAAAGGCCAGAAGAAGTGACAGATATGTGTAGATCAGTGAAGGGTGAAGT AGTGAGTTCAACATTTGATGAGCCTGGATATAGACATGTACAGCTTGCAGAGATTGTAATAGAGAAGGCAAAGAGAATGG TGGAGCATAGGAAAAATGTTGTAATATTATTAGATTCAATTACAAGATTAGCAAGAGCATATAACTCTGTAATACCTTCA TCTGGGAAGGTATTAACAGGTGGGGTAGATTCTAATGCCTTACAAAGACCTAAGAGATTTTTTGGTGCTGCAAGAAATAT AGAGAATGGAGGATCATTAACAATAATAGCAACTGCATTGATTGAGACAGGATCAAAGATGGATGAAGTAATCTTTGAGG AATTTAAGGGTACTGGAAATTGTGAAATAATATTAGATAGGAAAATATCAGATAAGAGAGTGTATCCTGCGATAGACATT TCAAAATCTGGTACAAGAAAAGAAGATATGTTAATAGATCATGTGTGTTTAAAGAAAGTATGGTTATTGAGAAGATTATT ATCATCTATGGGTTCTGTTGAAGCTATGGAGTTTTTAAGAGATAAGTTATCAATAACGAAAGATAACAATGAGTTTTTCG ATATGATGAATAGCTAG
Upstream 100 bases:
>100_bases TAATTTAATGTGTGGATCTAGTAATTCATTAGTGTAATAAAATGTATAACTGGGAAGCGTTCATAAAATCAACTTATTTT AAGTGTAATAGAGAGTTATT
Downstream 100 bases:
>100_bases TTAGCCGATAGTAAAGTATGGTTTTATATACCTGTAATTTAAGTTATATCTGTCTATAGATATATTAATGTATAACAATT AAATTATATAAATTTTTTAT
Product: transcription termination factor Rho
Products: NA
Alternate protein names: ATP-dependent helicase Rho 1 [H]
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MLESEDILLMKEEEVIEGIQSEEEVKVPEDKGGEVKVLDLSELKKKSIEDLLKIAEELGVVSNGRMLKQEIIFHLMKKVV NDGGAAIGGGVVEILSDGFGFLRSPEANYAASSDDVYISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSINFTD MGKLQRYVHFDDLIPLYPEERILLECNDPISLSKKDISMRVIDIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHP DIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHRKNVVILLDSITRLARAYNSVIPS SGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKISDKRVYPAIDI SKSGTRKEDMLIDHVCLKKVWLLRRLLSSMGSVEAMEFLRDKLSITKDNNEFFDMMNS
Sequences:
>Translated_458_residues MLESEDILLMKEEEVIEGIQSEEEVKVPEDKGGEVKVLDLSELKKKSIEDLLKIAEELGVVSNGRMLKQEIIFHLMKKVV NDGGAAIGGGVVEILSDGFGFLRSPEANYAASSDDVYISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSINFTD MGKLQRYVHFDDLIPLYPEERILLECNDPISLSKKDISMRVIDIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHP DIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHRKNVVILLDSITRLARAYNSVIPS SGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKISDKRVYPAIDI SKSGTRKEDMLIDHVCLKKVWLLRRLLSSMGSVEAMEFLRDKLSITKDNNEFFDMMNS >Mature_458_residues MLESEDILLMKEEEVIEGIQSEEEVKVPEDKGGEVKVLDLSELKKKSIEDLLKIAEELGVVSNGRMLKQEIIFHLMKKVV NDGGAAIGGGVVEILSDGFGFLRSPEANYAASSDDVYISAGQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSINFTD MGKLQRYVHFDDLIPLYPEERILLECNDPISLSKKDISMRVIDIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHP DIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHRKNVVILLDSITRLARAYNSVIPS SGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATALIETGSKMDEVIFEEFKGTGNCEIILDRKISDKRVYPAIDI SKSGTRKEDMLIDHVCLKKVWLLRRLLSSMGSVEAMEFLRDKLSITKDNNEFFDMMNS
Specific function: Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template [H]
COG id: COG1158
COG function: function code K; Transcription termination factor
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Rho family [H]
Homologues:
Organism=Escherichia coli, GI1790217, Length=419, Percent_Identity=59.4272076372315, Blast_Score=528, Evalue=1e-151, Organism=Escherichia coli, GI1788251, Length=244, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: 300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000194 - InterPro: IPR003593 - InterPro: IPR011129 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR011112 - InterPro: IPR011113 - InterPro: IPR004665 [H]
Pfam domain/function: PF00006 ATP-synt_ab; PF07498 Rho_N; PF07497 Rho_RNA_bind [H]
EC number: NA
Molecular weight: Translated: 51014; Mature: 51014
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLESEDILLMKEEEVIEGIQSEEEVKVPEDKGGEVKVLDLSELKKKSIEDLLKIAEELGV CCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCC VSNGRMLKQEIIFHLMKKVVNDGGAAIGGGVVEILSDGFGFLRSPEANYAASSDDVYISA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC GQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSINFTDMGKLQRYVHFDDLIPLYPEE CCEEEEECCCCCEEECCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC RILLECNDPISLSKKDISMRVIDIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHP EEEEEECCCCCCCCCCHHEEEEEHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC DIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHRKNV CEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE VILLDSITRLARAYNSVIPSSGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATAL EEEHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHH IETGSKMDEVIFEEFKGTGNCEIILDRKISDKRVYPAIDISKSGTRKEDMLIDHVCLKKV HHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHH WLLRRLLSSMGSVEAMEFLRDKLSITKDNNEFFDMMNS HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCC >Mature Secondary Structure MLESEDILLMKEEEVIEGIQSEEEVKVPEDKGGEVKVLDLSELKKKSIEDLLKIAEELGV CCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCC VSNGRMLKQEIIFHLMKKVVNDGGAAIGGGVVEILSDGFGFLRSPEANYAASSDDVYISA CCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEC GQIKKFNLRTGDIVSGEIRAPSEKERYFTLVKAHSINFTDMGKLQRYVHFDDLIPLYPEE CCEEEEECCCCCEEECCCCCCCCHHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCC RILLECNDPISLSKKDISMRVIDIVAPLGKGQRALIVAPPRAGKTIILQQIAHSISVNHP EEEEEECCCCCCCCCCHHEEEEEHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC DIELIVLLIGERPEEVTDMCRSVKGEVVSSTFDEPGYRHVQLAEIVIEKAKRMVEHRKNV CEEEEEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE VILLDSITRLARAYNSVIPSSGKVLTGGVDSNALQRPKRFFGAARNIENGGSLTIIATAL EEEHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHH IETGSKMDEVIFEEFKGTGNCEIILDRKISDKRVYPAIDISKSGTRKEDMLIDHVCLKKV HHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHH WLLRRLLSSMGSVEAMEFLRDKLSITKDNNEFFDMMNS HHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA