| Definition | Ehrlichia ruminantium str. Gardel, complete genome. |
|---|---|
| Accession | NC_006831 |
| Length | 1,499,920 |
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The map label for this gene is pheT
Identifier: 58617331
GI number: 58617331
Start: 978898
End: 981267
Strand: Reverse
Name: pheT
Synonym: ERGA_CDS_06040
Alternate gene names: 58617331
Gene position: 981267-978898 (Counterclockwise)
Preceding gene: 58617332
Following gene: 58617330
Centisome position: 65.42
GC content: 30.34
Gene sequence:
>2370_bases ATGAGATTTACACTTTCTTGGTTAATGCAGTATTTAGATACTGATGCTTCATTAGATTTTATTATTTCTAAGTTAAGTGA TATTGGATTAGAAGTAGATAGTGTAGATTGTAAAAAGCACCTTCAATCTTTTGTAGTTGTAGAAGTTATAGATGTAGTAC CACATCATGCTGCGGATAAGTTAAAAGTTTGTCAGGTATATGATGGAGTACAAACTTTTCAAGTTGTATGTGGTGCATCT AATGTTAAGGTTGGCATGAAATCTGTACTAGCCTATGTCGGTAGTGTGATACCAAAAAATCAAACTGTTATTAAAGTTGC TAAGCTGCGTGGAGTTGATAGCTATGGTATGTTATGCTCTAGAGATGAGTTAGGCATTACAGAAAATGATAGTACTGATG AAGGTATAATAGAGTTGTCTGATAATACATATAATGTAGGAGAGAGTTTTTTCTCATGTGATCCTGTGATAGAGTTGAAT ATTACTCCAAATCGTGGTGACTGTCTGGGAGTATATGGTATAGCACGTGATTTAGCTGCTGCTGGAGTAGGTAAGTTAAA GTCTGTTAATTTTTGTGATATTACTTTTGATAATACTTGTTATATTTCTCCAATTGAAATTTGTCTAGAGGTTCAAGGAG TAGTAAAAGGAGTATACATTAAGGGTATAAGAAATTGTGAGACCCCTAAATGGTTAAAAGAGTATTTATTCTCATGTGGG GTAAAATCTATTTCGTGTGTTGTTGATATTATAAATTATATTATGTTGTCTTTTAATAGACCTCTTCATATATATGATGC GGATAAAATAGCAGGTAAATTGGTTTTTAGGAAAATTGATGATCAAATAGAATTTTTTGCACTTAATGATAAAAAATACT TATTAGGAAAGGAAAATATTATTGCTGTTGATTTAGCAAATAGGATTCATAGTATTGTTGGAGTAATTGGTTCAGAATAT AGTAAATGCTTATTTGATACAGAAAATATTTTTTTAGAATGTGCATGGTTTGATCCTGTAGATATTGCTTTATCTTCTAG GAAGATAAAGTTATCTACAGATTCTAGTTATCGGCTTGAAAGGTTTGTTGACCCTGAGTTTCTTCAAGATGGTTTGAAAC TAGCTACAAAAATGATACTAGAGTATTGTGGTGGTAGCCCTTCTAGTATTGTTTCTGTACAGAATTATGTACACAATGAT ATCTTGTTGAATTTTTCTCCAGATTCTGTACGGAACATTGGTAGTGTTAGTATTACACGGGACGAAATTTTTGATTTCCT TTGTAATATTGGTTGTGTTGTAAAGAATCATGATTGTGATATTTGGATAGTAATTCCTCCGTCTTGGAGATCAGATCTTA AGCATTCTTTTGATCTTGTAGAGGAGGTGCTTAGATTATATGGGTATGATAAAATTCTTGAGAATCCTATACCTATTTCT AATATTGAATTTCCTGATAATTTGCATAATAAGCTAAGATCAGTACTATTATCACAAGGAATGATGGAAGTAGTAACATG GTCATTTACAAATCTAGAATTTGCTAAAAAATTTGGATATGATTCAGATATAATGTTAATAGATAATCCTATTAATAATA ACATGAATTTAATGCGGCCTAGTGTTTTATTGAATTTATTACAAGTTATATCTGAAAATCAAGCATATGGAAATAATGAT GCAGCTATTTTTGAGATAGGTCAGATATATAATATTAATAGTGTATGTGGTGATAATAATTATGTGGTAAGTGGGGTAAG ATATGGAGATAACTTACCTCGTAATTTTTATAAAACTGACAGGTCTGTTGATATATTTGATGTAAAATCTGATTTTTTTA AGGTTTTACAAGAAATGAATATTGGATATGATTCTGTTGATTTAGTAAGATCTACTAAGTCATATCTCCATCCTATGAAA TCTGCGGATGTATATTTTAATAATATTCTTATTGGATATTTTGGGGAGTTACATCCTAGTATTGTTCATTTGTATGAAAT AAAGCGTCCTATAGTTTGTTTTGAGGTATTTTTGTATAAAATTCCAGTTGTTGATTTAACACGTAAAGAATTTGTAGAGT TACGATATCAATCTGTAAAACGTGATTTTGCCTTTTTAGTTAGCAAAAATGTCAATATTCAGTGTTTGATAGAGGTTGCT AAAAAGACTAATGTTCAGTTAATAGAAGATGTGTCAATTTTTGATATATATGAAGGGAATGGTATAGATAAAGGTATGTT ATCTGTTGCCTTATCTGTCACGTTTAGATCTGTTGATCATACGTTAAATGATCAAGAGATAAAGGATGCATCTGATCTAA TAATTAGTGCAATTAGTAAAGGTTTTAATGGGATTCTTAGATCTTGTTAA
Upstream 100 bases:
>100_bases TAGTATCTCAATCTTAAGTGTAACTTAGCTAGTTAAGTGTGTTTATTCAGTATGAATGCTGTTTCAAGTGAGATTTATAG TTGTTAAGTATTAGTTCTTT
Downstream 100 bases:
>100_bases GTTTTTATTTTTATTTCTATAGTTACTGATAATGCTTTTACCTGTAGTATTAAAGGTTATTTATAGGTTTTTTGTATTTT TAATATGATTTGTATCTGTG
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 789; Mature: 789
Protein sequence:
>789_residues MRFTLSWLMQYLDTDASLDFIISKLSDIGLEVDSVDCKKHLQSFVVVEVIDVVPHHAADKLKVCQVYDGVQTFQVVCGAS NVKVGMKSVLAYVGSVIPKNQTVIKVAKLRGVDSYGMLCSRDELGITENDSTDEGIIELSDNTYNVGESFFSCDPVIELN ITPNRGDCLGVYGIARDLAAAGVGKLKSVNFCDITFDNTCYISPIEICLEVQGVVKGVYIKGIRNCETPKWLKEYLFSCG VKSISCVVDIINYIMLSFNRPLHIYDADKIAGKLVFRKIDDQIEFFALNDKKYLLGKENIIAVDLANRIHSIVGVIGSEY SKCLFDTENIFLECAWFDPVDIALSSRKIKLSTDSSYRLERFVDPEFLQDGLKLATKMILEYCGGSPSSIVSVQNYVHND ILLNFSPDSVRNIGSVSITRDEIFDFLCNIGCVVKNHDCDIWIVIPPSWRSDLKHSFDLVEEVLRLYGYDKILENPIPIS NIEFPDNLHNKLRSVLLSQGMMEVVTWSFTNLEFAKKFGYDSDIMLIDNPINNNMNLMRPSVLLNLLQVISENQAYGNND AAIFEIGQIYNINSVCGDNNYVVSGVRYGDNLPRNFYKTDRSVDIFDVKSDFFKVLQEMNIGYDSVDLVRSTKSYLHPMK SADVYFNNILIGYFGELHPSIVHLYEIKRPIVCFEVFLYKIPVVDLTRKEFVELRYQSVKRDFAFLVSKNVNIQCLIEVA KKTNVQLIEDVSIFDIYEGNGIDKGMLSVALSVTFRSVDHTLNDQEIKDASDLIISAISKGFNGILRSC
Sequences:
>Translated_789_residues MRFTLSWLMQYLDTDASLDFIISKLSDIGLEVDSVDCKKHLQSFVVVEVIDVVPHHAADKLKVCQVYDGVQTFQVVCGAS NVKVGMKSVLAYVGSVIPKNQTVIKVAKLRGVDSYGMLCSRDELGITENDSTDEGIIELSDNTYNVGESFFSCDPVIELN ITPNRGDCLGVYGIARDLAAAGVGKLKSVNFCDITFDNTCYISPIEICLEVQGVVKGVYIKGIRNCETPKWLKEYLFSCG VKSISCVVDIINYIMLSFNRPLHIYDADKIAGKLVFRKIDDQIEFFALNDKKYLLGKENIIAVDLANRIHSIVGVIGSEY SKCLFDTENIFLECAWFDPVDIALSSRKIKLSTDSSYRLERFVDPEFLQDGLKLATKMILEYCGGSPSSIVSVQNYVHND ILLNFSPDSVRNIGSVSITRDEIFDFLCNIGCVVKNHDCDIWIVIPPSWRSDLKHSFDLVEEVLRLYGYDKILENPIPIS NIEFPDNLHNKLRSVLLSQGMMEVVTWSFTNLEFAKKFGYDSDIMLIDNPINNNMNLMRPSVLLNLLQVISENQAYGNND AAIFEIGQIYNINSVCGDNNYVVSGVRYGDNLPRNFYKTDRSVDIFDVKSDFFKVLQEMNIGYDSVDLVRSTKSYLHPMK SADVYFNNILIGYFGELHPSIVHLYEIKRPIVCFEVFLYKIPVVDLTRKEFVELRYQSVKRDFAFLVSKNVNIQCLIEVA KKTNVQLIEDVSIFDIYEGNGIDKGMLSVALSVTFRSVDHTLNDQEIKDASDLIISAISKGFNGILRSC >Mature_789_residues MRFTLSWLMQYLDTDASLDFIISKLSDIGLEVDSVDCKKHLQSFVVVEVIDVVPHHAADKLKVCQVYDGVQTFQVVCGAS NVKVGMKSVLAYVGSVIPKNQTVIKVAKLRGVDSYGMLCSRDELGITENDSTDEGIIELSDNTYNVGESFFSCDPVIELN ITPNRGDCLGVYGIARDLAAAGVGKLKSVNFCDITFDNTCYISPIEICLEVQGVVKGVYIKGIRNCETPKWLKEYLFSCG VKSISCVVDIINYIMLSFNRPLHIYDADKIAGKLVFRKIDDQIEFFALNDKKYLLGKENIIAVDLANRIHSIVGVIGSEY SKCLFDTENIFLECAWFDPVDIALSSRKIKLSTDSSYRLERFVDPEFLQDGLKLATKMILEYCGGSPSSIVSVQNYVHND ILLNFSPDSVRNIGSVSITRDEIFDFLCNIGCVVKNHDCDIWIVIPPSWRSDLKHSFDLVEEVLRLYGYDKILENPIPIS NIEFPDNLHNKLRSVLLSQGMMEVVTWSFTNLEFAKKFGYDSDIMLIDNPINNNMNLMRPSVLLNLLQVISENQAYGNND AAIFEIGQIYNINSVCGDNNYVVSGVRYGDNLPRNFYKTDRSVDIFDVKSDFFKVLQEMNIGYDSVDLVRSTKSYLHPMK SADVYFNNILIGYFGELHPSIVHLYEIKRPIVCFEVFLYKIPVVDLTRKEFVELRYQSVKRDFAFLVSKNVNIQCLIEVA KKTNVQLIEDVSIFDIYEGNGIDKGMLSVALSVTFRSVDHTLNDQEIKDASDLIISAISKGFNGILRSC
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain
Homologues:
Organism=Escherichia coli, GI1788006, Length=807, Percent_Identity=31.1028500619579, Blast_Score=380, Evalue=1e-106,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYFB_EHRRG (Q5FFS3)
Other databases:
- EMBL: CR925677 - RefSeq: YP_196530.1 - ProteinModelPortal: Q5FFS3 - SMR: Q5FFS3 - STRING: Q5FFS3 - GeneID: 3267822 - GenomeReviews: CR925677_GR - KEGG: erg:ERGA_CDS_06040 - eggNOG: COG0072 - HOGENOM: HBG399638 - OMA: ADKLRVC - ProtClustDB: PRK00629 - BioCyc: ERUM302409:ERGA_CDS_06040-MONOMER - GO: GO:0005737 - HAMAP: MF_00283 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 - Gene3D: G3DSA:3.50.40.10 - Gene3D: G3DSA:3.30.56.20 - Gene3D: G3DSA:3.30.70.380 - Gene3D: G3DSA:2.40.50.140 - SMART: SM00873 - SMART: SM00874 - SMART: SM00896 - TIGRFAMs: TIGR00472
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind; SSF56037 B3_4; SSF54991 Fdx_AntiC_bd; SSF50249 Nucleic_acid_OB; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 88975; Mature: 88975
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS51483 B5; PS51447 FDX_ACB; PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRFTLSWLMQYLDTDASLDFIISKLSDIGLEVDSVDCKKHLQSFVVVEVIDVVPHHAADK CEEEHHHHHHHHCCCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCH LKVCQVYDGVQTFQVVCGASNVKVGMKSVLAYVGSVIPKNQTVIKVAKLRGVDSYGMLCS HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCEEC RDELGITENDSTDEGIIELSDNTYNVGESFFSCDPVIELNITPNRGDCLGVYGIARDLAA CCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHH AGVGKLKSVNFCDITFDNTCYISPIEICLEVQGVVKGVYIKGIRNCETPKWLKEYLFSCG HCCCCCCCCEEEEEEECCEEEECHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCC VKSISCVVDIINYIMLSFNRPLHIYDADKIAGKLVFRKIDDQIEFFALNDKKYLLGKENI CHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCE IAVDLANRIHSIVGVIGSEYSKCLFDTENIFLECAWFDPVDIALSSRKIKLSTDSSYRLE EEEEHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEECCCHHEEECCCEEEEECCCCHHHH RFVDPEFLQDGLKLATKMILEYCGGSPSSIVSVQNYVHNDILLNFSPDSVRNIGSVSITR HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCEEEEH DEIFDFLCNIGCVVKNHDCDIWIVIPPSWRSDLKHSFDLVEEVLRLYGYDKILENPIPIS HHHHHHHHCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC NIEFPDNLHNKLRSVLLSQGMMEVVTWSFTNLEFAKKFGYDSDIMLIDNPINNNMNLMRP CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCH SVLLNLLQVISENQAYGNNDAAIFEIGQIYNINSVCGDNNYVVSGVRYGDNLPRNFYKTD HHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCEEEEEEECCCCCCCHHHCCC RSVDIFDVKSDFFKVLQEMNIGYDSVDLVRSTKSYLHPMKSADVYFNNILIGYFGELHPS CCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEHHEEEEHHHHHCHH IVHLYEIKRPIVCFEVFLYKIPVVDLTRKEFVELRYQSVKRDFAFLVSKNVNIQCLIEVA HHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEH KKTNVQLIEDVSIFDIYEGNGIDKGMLSVALSVTFRSVDHTLNDQEIKDASDLIISAISK HCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH GFNGILRSC HHHHHHHCC >Mature Secondary Structure MRFTLSWLMQYLDTDASLDFIISKLSDIGLEVDSVDCKKHLQSFVVVEVIDVVPHHAADK CEEEHHHHHHHHCCCCHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHCCCCCCCH LKVCQVYDGVQTFQVVCGASNVKVGMKSVLAYVGSVIPKNQTVIKVAKLRGVDSYGMLCS HHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCCEEC RDELGITENDSTDEGIIELSDNTYNVGESFFSCDPVIELNITPNRGDCLGVYGIARDLAA CCCCCCCCCCCCCCCEEEECCCCCCCCCHHCCCCCEEEEEECCCCCCEEEHHHHHHHHHH AGVGKLKSVNFCDITFDNTCYISPIEICLEVQGVVKGVYIKGIRNCETPKWLKEYLFSCG HCCCCCCCCEEEEEEECCEEEECHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHCC VKSISCVVDIINYIMLSFNRPLHIYDADKIAGKLVFRKIDDQIEFFALNDKKYLLGKENI CHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCEEEEEECCCEEEECCCCE IAVDLANRIHSIVGVIGSEYSKCLFDTENIFLECAWFDPVDIALSSRKIKLSTDSSYRLE EEEEHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEEECCCHHEEECCCEEEEECCCCHHHH RFVDPEFLQDGLKLATKMILEYCGGSPSSIVSVQNYVHNDILLNFSPDSVRNIGSVSITR HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCHHHHCCCCEEEEH DEIFDFLCNIGCVVKNHDCDIWIVIPPSWRSDLKHSFDLVEEVLRLYGYDKILENPIPIS HHHHHHHHCCCEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC NIEFPDNLHNKLRSVLLSQGMMEVVTWSFTNLEFAKKFGYDSDIMLIDNPINNNMNLMRP CCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHCCCCCCEEEEECCCCCCCCCCCH SVLLNLLQVISENQAYGNNDAAIFEIGQIYNINSVCGDNNYVVSGVRYGDNLPRNFYKTD HHHHHHHHHHHCCCCCCCCCCEEEEECCEEECCCCCCCCCEEEEEEECCCCCCCHHHCCC RSVDIFDVKSDFFKVLQEMNIGYDSVDLVRSTKSYLHPMKSADVYFNNILIGYFGELHPS CCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEEHHEEEEHHHHHCHH IVHLYEIKRPIVCFEVFLYKIPVVDLTRKEFVELRYQSVKRDFAFLVSKNVNIQCLIEVA HHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEH KKTNVQLIEDVSIFDIYEGNGIDKGMLSVALSVTFRSVDHTLNDQEIKDASDLIISAISK HCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH GFNGILRSC HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA