| Definition | Ehrlichia ruminantium str. Gardel, complete genome. |
|---|---|
| Accession | NC_006831 |
| Length | 1,499,920 |
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The map label for this gene is comEC [H]
Identifier: 58617330
GI number: 58617330
Start: 976151
End: 978172
Strand: Reverse
Name: comEC [H]
Synonym: ERGA_CDS_06030
Alternate gene names: 58617330
Gene position: 978172-976151 (Counterclockwise)
Preceding gene: 58617331
Following gene: 58617326
Centisome position: 65.21
GC content: 27.5
Gene sequence:
>2022_bases GTGGATGTAATAATTACAAATTTTATATCATTTTTACATAAGCAACTGGAAAATAATAAAAATTCTTTAATGTTATGGAT TCCAGTGCTACAAGGAATTGGTGTAATTATATACTTTTCTTTACCAACAGAACCACAAAGCTATATTGTATTATGTATAG TTTTTACATTGTTTGTAAGTTTAATTGCTGTAATTTTGAAGAAGAGCAATTGCATATTTTTATCACTTTTTTTTATATTG TTTGGTTTTGTTACTATTTATGTAAAAGCTCATTATTTTTCTGGTGATGTATTACAAGCTAAGATATATGCAAAAGATAT TATTGGAACAGTAAAAGAGGTAAGTAGTAAACAATCACATAAGAGGGTAATAATTTGTGATGTTCAAAATGTTAAATATA ATGTTACCTGTATAAGGTTAGTGTCTCGTACTCAATGGGATGAGAATATTGAAATAGGTGATAAAATTTTACTTTCTGCG ATTGTTTATCCACCGCAAACTGCAGTTTCACCGTTTTCTTATGACTTTTCTCGTGTTTCATATTTTAAAAAGATAAATGG AATAGGTTTCACAATAAGTAATGTTAGGTTATTTGAAAAAAGAAAAAGTAAGAAAATTTTTGAGTATATAGAACTAATCA GATTACATATATACAAACTTTTCTTAAGAAATTTAACTTGGGATACTGCTAATGTAGTTAGTGCATTGGTAATTGGTAAA AAGGATGGGATTAGTAATGATATAATGGGTAATATTAGAAATGCTGGAATAGCTCATCTTTTTGCTATTTCTGGATTGCA TTTATCCTTTATTACTGGATTGTTTTTTTCTTTATCAAGAAATTTATTAGTTTTTTTTGGGAATTTGGCTGAAAGTTATA ATATAAAAAAGATATCTGCTGTTATAGCCATTATAGTGAGTTTAATATATTTGTTACTTACTGGGATGCCAGTTTCTGCT GAACGTGCATTTTTAATGACAAGTTATGTTTTTATAGGTATTCTCATTGATCGGCGTCATAATAATTTTTGTGCTATAGC AATTGCAGCGTTTATTATATTATTGTGCTATCCTGAAGCAGTTCTTAATCCAAGTTTTCAGATGTCATTTGCTGCTGTGT TGGCTCTTATAGCAAGTTGTGATATTTTTACAAAACTTATTATTATAGGTGATATACTACAGTATTTTTCATCGATAGTT TTGAGTTCATTAATTGCAGGATTAGCTACGTTACCGTATGTAATATATCATTTTCACAATTTTTCTATTATTGGAGTTTT TGTTAATGTGTTAGCAATTCCCATTACTACATTTTTTATTATACCGTTGAGTTTGTTATATGTTGTATTAAGTTTTGTCA ATTTAGAGTTTTATATTTCATATGCGTTAGAAAGTTCTGTAAAGTTGCTCTTATATATATCTAATTATGTGTCTAAAATA GATAGTTTAATACTATCGTTTCATGCAGTGTCATCAGTATCTATATTGGTAATTACATTGGGGTTTTTGTTTTTATGTTT ATGGAATGGAAGTTTAAGATTTTTAGGATTAGTGGTTATTGTGTGTGGTTTATTTATTGGTTTTCAATATGTTACACCTG ATATATTGGTAAATATTAATAATATTGCGGTTAAAGAATCAGATGGGCAATTGTATTCAGTGAATAAAAATGCACATATT ACAGGTTTTATAGGTTTAGTGTGGGCAAAGCAGAATGGTCAACAGAAACTCTTGAAATATAATTTGGAAAATGATAAATG CTTATTTTGTGAAGCAGGTAAAGGATGTATATATACTAAGCAAAAAAGAAAAATTTTAATCGCATATACATCTGAATATG TAATACAGAATTGTTTAGACATAGATTTAGTGATACAATTTGGGAAGTTTGTTTATCCACAGGAATGTCATAAGCAATAT CTTAGTTATGTTGATATAATAAGTCATGGGCCATATTTTATTTGGGTGTTAGATAATAAAGTAAAGATTAGTAAACATAA TAATAGAATATGGAATGTCTAA
Upstream 100 bases:
>100_bases GTATGTATTATTTATTAATATGAACAATATAAAATTATTTATTAAGTATTATTAATAAATAGTATATAAATTAATAATAT TATTAATTTATATACTATTT
Downstream 100 bases:
>100_bases TATATTAGAATGTGTATGATAAGAATGTCATAAGCAATATCTTAGTTATGTTGATATAATAAGTCATGGACTATATTTTA TTTGAGTGTTAGATTATAAA
Product: putative competence locus E protein 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 673; Mature: 673
Protein sequence:
>673_residues MDVIITNFISFLHKQLENNKNSLMLWIPVLQGIGVIIYFSLPTEPQSYIVLCIVFTLFVSLIAVILKKSNCIFLSLFFIL FGFVTIYVKAHYFSGDVLQAKIYAKDIIGTVKEVSSKQSHKRVIICDVQNVKYNVTCIRLVSRTQWDENIEIGDKILLSA IVYPPQTAVSPFSYDFSRVSYFKKINGIGFTISNVRLFEKRKSKKIFEYIELIRLHIYKLFLRNLTWDTANVVSALVIGK KDGISNDIMGNIRNAGIAHLFAISGLHLSFITGLFFSLSRNLLVFFGNLAESYNIKKISAVIAIIVSLIYLLLTGMPVSA ERAFLMTSYVFIGILIDRRHNNFCAIAIAAFIILLCYPEAVLNPSFQMSFAAVLALIASCDIFTKLIIIGDILQYFSSIV LSSLIAGLATLPYVIYHFHNFSIIGVFVNVLAIPITTFFIIPLSLLYVVLSFVNLEFYISYALESSVKLLLYISNYVSKI DSLILSFHAVSSVSILVITLGFLFLCLWNGSLRFLGLVVIVCGLFIGFQYVTPDILVNINNIAVKESDGQLYSVNKNAHI TGFIGLVWAKQNGQQKLLKYNLENDKCLFCEAGKGCIYTKQKRKILIAYTSEYVIQNCLDIDLVIQFGKFVYPQECHKQY LSYVDIISHGPYFIWVLDNKVKISKHNNRIWNV
Sequences:
>Translated_673_residues MDVIITNFISFLHKQLENNKNSLMLWIPVLQGIGVIIYFSLPTEPQSYIVLCIVFTLFVSLIAVILKKSNCIFLSLFFIL FGFVTIYVKAHYFSGDVLQAKIYAKDIIGTVKEVSSKQSHKRVIICDVQNVKYNVTCIRLVSRTQWDENIEIGDKILLSA IVYPPQTAVSPFSYDFSRVSYFKKINGIGFTISNVRLFEKRKSKKIFEYIELIRLHIYKLFLRNLTWDTANVVSALVIGK KDGISNDIMGNIRNAGIAHLFAISGLHLSFITGLFFSLSRNLLVFFGNLAESYNIKKISAVIAIIVSLIYLLLTGMPVSA ERAFLMTSYVFIGILIDRRHNNFCAIAIAAFIILLCYPEAVLNPSFQMSFAAVLALIASCDIFTKLIIIGDILQYFSSIV LSSLIAGLATLPYVIYHFHNFSIIGVFVNVLAIPITTFFIIPLSLLYVVLSFVNLEFYISYALESSVKLLLYISNYVSKI DSLILSFHAVSSVSILVITLGFLFLCLWNGSLRFLGLVVIVCGLFIGFQYVTPDILVNINNIAVKESDGQLYSVNKNAHI TGFIGLVWAKQNGQQKLLKYNLENDKCLFCEAGKGCIYTKQKRKILIAYTSEYVIQNCLDIDLVIQFGKFVYPQECHKQY LSYVDIISHGPYFIWVLDNKVKISKHNNRIWNV >Mature_673_residues MDVIITNFISFLHKQLENNKNSLMLWIPVLQGIGVIIYFSLPTEPQSYIVLCIVFTLFVSLIAVILKKSNCIFLSLFFIL FGFVTIYVKAHYFSGDVLQAKIYAKDIIGTVKEVSSKQSHKRVIICDVQNVKYNVTCIRLVSRTQWDENIEIGDKILLSA IVYPPQTAVSPFSYDFSRVSYFKKINGIGFTISNVRLFEKRKSKKIFEYIELIRLHIYKLFLRNLTWDTANVVSALVIGK KDGISNDIMGNIRNAGIAHLFAISGLHLSFITGLFFSLSRNLLVFFGNLAESYNIKKISAVIAIIVSLIYLLLTGMPVSA ERAFLMTSYVFIGILIDRRHNNFCAIAIAAFIILLCYPEAVLNPSFQMSFAAVLALIASCDIFTKLIIIGDILQYFSSIV LSSLIAGLATLPYVIYHFHNFSIIGVFVNVLAIPITTFFIIPLSLLYVVLSFVNLEFYISYALESSVKLLLYISNYVSKI DSLILSFHAVSSVSILVITLGFLFLCLWNGSLRFLGLVVIVCGLFIGFQYVTPDILVNINNIAVKESDGQLYSVNKNAHI TGFIGLVWAKQNGQQKLLKYNLENDKCLFCEAGKGCIYTKQKRKILIAYTSEYVIQNCLDIDLVIQFGKFVYPQECHKQY LSYVDIISHGPYFIWVLDNKVKISKHNNRIWNV
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=255, Percent_Identity=29.0196078431373, Blast_Score=73, Evalue=5e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 76153; Mature: 76153
Theoretical pI: Translated: 9.26; Mature: 9.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVIITNFISFLHKQLENNKNSLMLWIPVLQGIGVIIYFSLPTEPQSYIVLCIVFTLFVS CCEEHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH LIAVILKKSNCIFLSLFFILFGFVTIYVKAHYFSGDVLQAKIYAKDIIGTVKEVSSKQSH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCEEEHHHHHHHHHHHHHHHHCCCCC KRVIICDVQNVKYNVTCIRLVSRTQWDENIEIGDKILLSAIVYPPQTAVSPFSYDFSRVS CEEEEEEECCCEEEEEEEEEEHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH YFKKINGIGFTISNVRLFEKRKSKKIFEYIELIRLHIYKLFLRNLTWDTANVVSALVIGK HHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC KDGISNDIMGNIRNAGIAHLFAISGLHLSFITGLFFSLSRNLLVFFGNLAESYNIKKISA CCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHH VIAIIVSLIYLLLTGMPVSAERAFLMTSYVFIGILIDRRHNNFCAIAIAAFIILLCYPEA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCHH VLNPSFQMSFAAVLALIASCDIFTKLIIIGDILQYFSSIVLSSLIAGLATLPYVIYHFHN HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSIIGVFVNVLAIPITTFFIIPLSLLYVVLSFVNLEFYISYALESSVKLLLYISNYVSKI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHH DSLILSFHAVSSVSILVITLGFLFLCLWNGSLRFLGLVVIVCGLFIGFQYVTPDILVNIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC NIAVKESDGQLYSVNKNAHITGFIGLVWAKQNGQQKLLKYNLENDKCLFCEAGKGCIYTK CEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCHHHHEECCCCCCEEEEECCCCCEEEC QKRKILIAYTSEYVIQNCLDIDLVIQFGKFVYPQECHKQYLSYVDIISHGPYFIWVLDNK CCCEEEEEECHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCE VKISKHNNRIWNV EEEEECCCEECCC >Mature Secondary Structure MDVIITNFISFLHKQLENNKNSLMLWIPVLQGIGVIIYFSLPTEPQSYIVLCIVFTLFVS CCEEHHHHHHHHHHHHHCCCCCEEEEEEHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH LIAVILKKSNCIFLSLFFILFGFVTIYVKAHYFSGDVLQAKIYAKDIIGTVKEVSSKQSH HHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEECCCEEEHHHHHHHHHHHHHHHHCCCCC KRVIICDVQNVKYNVTCIRLVSRTQWDENIEIGDKILLSAIVYPPQTAVSPFSYDFSRVS CEEEEEEECCCEEEEEEEEEEHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHH YFKKINGIGFTISNVRLFEKRKSKKIFEYIELIRLHIYKLFLRNLTWDTANVVSALVIGK HHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC KDGISNDIMGNIRNAGIAHLFAISGLHLSFITGLFFSLSRNLLVFFGNLAESYNIKKISA CCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHH VIAIIVSLIYLLLTGMPVSAERAFLMTSYVFIGILIDRRHNNFCAIAIAAFIILLCYPEA HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCHH VLNPSFQMSFAAVLALIASCDIFTKLIIIGDILQYFSSIVLSSLIAGLATLPYVIYHFHN HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC FSIIGVFVNVLAIPITTFFIIPLSLLYVVLSFVNLEFYISYALESSVKLLLYISNYVSKI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHHHHHH DSLILSFHAVSSVSILVITLGFLFLCLWNGSLRFLGLVVIVCGLFIGFQYVTPDILVNIN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC NIAVKESDGQLYSVNKNAHITGFIGLVWAKQNGQQKLLKYNLENDKCLFCEAGKGCIYTK CEEEEECCCCEEEECCCCEEEEEEEEEEECCCCCHHHHEECCCCCCEEEEECCCCCEEEC QKRKILIAYTSEYVIQNCLDIDLVIQFGKFVYPQECHKQYLSYVDIISHGPYFIWVLDNK CCCEEEEEECHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCE VKISKHNNRIWNV EEEEECCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]