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The map label for this gene is yqgF [C]

Identifier: 58617309

GI number: 58617309

Start: 946713

End: 947183

Strand: Reverse

Name: yqgF [C]

Synonym: ERGA_CDS_05820

Alternate gene names: 58617309

Gene position: 947183-946713 (Counterclockwise)

Preceding gene: 58617310

Following gene: 58617306

Centisome position: 63.15

GC content: 27.39

Gene sequence:

>471_bases
GTGTTGTATAAAAATATTAATGAATTTGAACAAGTTATAGATAAAACAAAGAGAATTATGTGTTTAGATTTTGGAGAAAA
GAAAATAGGAGTTGCTTTAAGTGATAAAACAAATTTAATAGCAATACCGCATAGTGTATATGTTCGAAAAAATACCAGAA
AAGATTTAGGTGGTTTATATGGTATACTTATAGAAAATGATGCAGGTTCAATGGTAATTGGGTTGCCACTTGATTTATTT
GGTATGGGTAATGAGTTATGTGATAAAGTAATGTTATTTGCAAATCGTATGATTAAAAAGTATGCAATTAATATTTATTT
GCATGATGAAAGATATAGTACTGCTATGGCTACTAGGGTAGCAAAATTAGCTAATATTAAGAGAAAAGAATCTCAAAAAA
TAGATGATAAAATTGCTGCAGTATTAATTTTACAACAGGTGTTAGATATGGTAAAGATTTATCAGATGTAG

Upstream 100 bases:

>100_bases
TAGTTGTGTATTACATATATATGTGTTGTAGATTATATTATTATGGTTTTAAAATTCTAAGTTTTATAGATTTGTAATGT
ATACTGGGTAACGTAATATA

Downstream 100 bases:

>100_bases
GGTTATAATATCTAACTTTTAAGTTTATATGTAGTGATCATATAAAAAATTTAGTGTATACGTTGGTTAAATAAAGTTAT
ATATTTATATTGTAAAGTCT

Product: putative Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIENDAGSMVIGLPLDLF
GMGNELCDKVMLFANRMIKKYAINIYLHDERYSTAMATRVAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQM

Sequences:

>Translated_156_residues
MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIENDAGSMVIGLPLDLF
GMGNELCDKVMLFANRMIKKYAINIYLHDERYSTAMATRVAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQM
>Mature_156_residues
MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLYGILIENDAGSMVIGLPLDLF
GMGNELCDKVMLFANRMIKKYAINIYLHDERYSTAMATRVAKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQM

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_EHRRG (Q5FFQ2)

Other databases:

- EMBL:   CR925677
- RefSeq:   YP_196508.1
- ProteinModelPortal:   Q5FFQ2
- SMR:   Q5FFQ2
- STRING:   Q5FFQ2
- GeneID:   3267968
- GenomeReviews:   CR925677_GR
- KEGG:   erg:ERGA_CDS_05820
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ERSIAMP
- ProtClustDB:   CLSK749487
- BioCyc:   ERUM302409:ERGA_CDS_05820-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17789; Mature: 17789

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY
CCCCCHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCEEEEECCCHHHCCCEE
GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKKYAINIYLHDERYSTAMATRV
EEEEECCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHH
AKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLYKNINEFEQVIDKTKRIMCLDFGEKKIGVALSDKTNLIAIPHSVYVRKNTRKDLGGLY
CCCCCHHHHHHHHHHHHEEEEEECCCCEEEEEECCCCCEEEECCEEEEECCCHHHCCCEE
GILIENDAGSMVIGLPLDLFGMGNELCDKVMLFANRMIKKYAINIYLHDERYSTAMATRV
EEEEECCCCCEEEECCHHHHCCCHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHH
AKLANIKRKESQKIDDKIAAVLILQQVLDMVKIYQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA