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The map label for this gene is sodB [H]

Identifier: 58617269

GI number: 58617269

Start: 876584

End: 877216

Strand: Reverse

Name: sodB [H]

Synonym: ERGA_CDS_05420

Alternate gene names: 58617269

Gene position: 877216-876584 (Counterclockwise)

Preceding gene: 58617271

Following gene: 58617268

Centisome position: 58.48

GC content: 30.33

Gene sequence:

>633_bases
ATGTTTACTTTGCCAGAACTGCCTTATCAAAAAGATGATTTAGCCCCATATTTGAGTGCTAATGTGTTGAATTATCACTA
TGGAAAGCATCATCAAGGTTATGTAAATGCTTTAAATAATCTTGTTGCAGGGACTGATTTCTGTACCTGTACGAATGAAG
ATTTACCTGCGGTTATTAAAGCTACACATAGTGATTTAGCAACTAGATCAATATTTAATAATGCTGGTCAAGTATGGAAT
CATAATTTTTATTGGCAATCTATAACAAAGAATGGTGTTGTTACGCCTAAAGGAGAGTTATTAGATAGAATAAATAAAGA
TTTTGAAAGTGTTGAAAAGTTTAATAATGCTTTTACTGAAGCTGGAAAAGGTCATTTTGGTAGTGGATGGGTATGGTTGG
TTTTTGATACTGTAGAGCAAAAACTTAAAATTTTGTGTACAGCTAATGGTGATACTCCTATTACTCAATATCCTGATACA
TATCCATTACTGACTATGGATGTATGGGAACACGCTTATTATTTAGATTACTTTAATGTTCGTCAAAATTATATAGAAAT
ATTTTTAAAACATTTAGTTAATTGGGATTTTGCATCTCAAAGATTTTCTCAATGTATTGATAATGTTAAATAA

Upstream 100 bases:

>100_bases
AAGATATAATTTTTTGTTTGATATACATTTAAAAATTATTTGTGTCAGCATTTTAATATTCTATTTATTATATAGTTAAT
AATTAATTTGGAGGGATAAT

Downstream 100 bases:

>100_bases
ATATTTTCTTAAGATGCTAATTTTACATTATTTTCTACTATTGTTTAATTTACTTATAGAGTTTTAATTTTTATTATGAT
ATTTTAAGTATTAATTTAGT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MFTLPELPYQKDDLAPYLSANVLNYHYGKHHQGYVNALNNLVAGTDFCTCTNEDLPAVIKATHSDLATRSIFNNAGQVWN
HNFYWQSITKNGVVTPKGELLDRINKDFESVEKFNNAFTEAGKGHFGSGWVWLVFDTVEQKLKILCTANGDTPITQYPDT
YPLLTMDVWEHAYYLDYFNVRQNYIEIFLKHLVNWDFASQRFSQCIDNVK

Sequences:

>Translated_210_residues
MFTLPELPYQKDDLAPYLSANVLNYHYGKHHQGYVNALNNLVAGTDFCTCTNEDLPAVIKATHSDLATRSIFNNAGQVWN
HNFYWQSITKNGVVTPKGELLDRINKDFESVEKFNNAFTEAGKGHFGSGWVWLVFDTVEQKLKILCTANGDTPITQYPDT
YPLLTMDVWEHAYYLDYFNVRQNYIEIFLKHLVNWDFASQRFSQCIDNVK
>Mature_210_residues
MFTLPELPYQKDDLAPYLSANVLNYHYGKHHQGYVNALNNLVAGTDFCTCTNEDLPAVIKATHSDLATRSIFNNAGQVWN
HNFYWQSITKNGVVTPKGELLDRINKDFESVEKFNNAFTEAGKGHFGSGWVWLVFDTVEQKLKILCTANGDTPITQYPDT
YPLLTMDVWEHAYYLDYFNVRQNYIEIFLKHLVNWDFASQRFSQCIDNVK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=204, Percent_Identity=38.2352941176471, Blast_Score=137, Evalue=8e-33,
Organism=Homo sapiens, GI67782305, Length=204, Percent_Identity=38.2352941176471, Blast_Score=137, Evalue=8e-33,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=32.512315270936, Blast_Score=106, Evalue=1e-23,
Organism=Escherichia coli, GI1787946, Length=202, Percent_Identity=47.029702970297, Blast_Score=184, Evalue=3e-48,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=38.6473429951691, Blast_Score=138, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=34.4827586206897, Blast_Score=117, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=35.3233830845771, Blast_Score=117, Evalue=5e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=31.8840579710145, Blast_Score=95, Evalue=8e-21,
Organism=Drosophila melanogaster, GI17136812, Length=203, Percent_Identity=35.4679802955665, Blast_Score=116, Evalue=8e-27,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24233; Mature: 24233

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLPELPYQKDDLAPYLSANVLNYHYGKHHQGYVNALNNLVAGTDFCTCTNEDLPAVIK
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHH
ATHSDLATRSIFNNAGQVWNHNFYWQSITKNGVVTPKGELLDRINKDFESVEKFNNAFTE
HHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKGHFGSGWVWLVFDTVEQKLKILCTANGDTPITQYPDTYPLLTMDVWEHAYYLDYFNV
CCCCCCCCCEEEEEEHHHHHHEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
RQNYIEIFLKHLVNWDFASQRFSQCIDNVK
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MFTLPELPYQKDDLAPYLSANVLNYHYGKHHQGYVNALNNLVAGTDFCTCTNEDLPAVIK
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHH
ATHSDLATRSIFNNAGQVWNHNFYWQSITKNGVVTPKGELLDRINKDFESVEKFNNAFTE
HHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AGKGHFGSGWVWLVFDTVEQKLKILCTANGDTPITQYPDTYPLLTMDVWEHAYYLDYFNV
CCCCCCCCCEEEEEEHHHHHHEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
RQNYIEIFLKHLVNWDFASQRFSQCIDNVK
HHHHHHHHHHHHHCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]