| Definition | Ehrlichia ruminantium str. Gardel, complete genome. |
|---|---|
| Accession | NC_006831 |
| Length | 1,499,920 |
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The map label for this gene is virB4 [H]
Identifier: 58617267
GI number: 58617267
Start: 873497
End: 875902
Strand: Reverse
Name: virB4 [H]
Synonym: ERGA_CDS_05400
Alternate gene names: 58617267
Gene position: 875902-873497 (Counterclockwise)
Preceding gene: 58617268
Following gene: 58617266
Centisome position: 58.4
GC content: 32.46
Gene sequence:
>2406_bases GTGATGTTAAAGCTAAATAGGTTGCAAACAAAAAAAAGAAAAATAATAGCTCGGGAATATCATGAGTCTAATTTTATTCC TTATAGTGAGCATTGGAATTCTTCTACATTGATGACAAAAGATGGTTCAATGCTTAAGGTTATTAAATTATCTGGATATG CGTTTGAAACTGCTGACGATGAAGATTTATCTATACAAAATTCTATTCGTAATCAAATGTTAAGAAGTATATCATCTTCA TCTTTTGGTTTGTATTTTCATATAATTAGACGTAGAAGGAATGCTTTTACAGAAGGTTTCGCTAGTGATAAGGTATCTAG TTCATTTGCAAACTATGTAAATGTAAAATGGAGGGAAAAGCATGCAACAAAACAGTCTTTTACTAATGATTTGTATATTA CAATAGTTAGGGAAGGTGGCAAAAAAGGAATGGAATTTCTTTCTAGTATCCTTGATAAGTTTGGAAAAGGTGCTGCGCAA GAAGCAAGGATGAAGGATTTGCATGCTATTTCTGAAGATTTGGATGAAGTGACAAATCGTGTATTTACAAGTTTACGTAA CTATATGCCTAAAATTTTAGGTATTAGAGAAACCAAACATGGGGTATTTTCTGAGATCATGGAATTTTTGTTGCAAATAG TAAACTGTGGTTCTTTTCAATATGCATTATTTCCTCTGGGGGATGTATCACGGTACTTGCCTATGCATAGGTTATACTTT GGTCATAAGACAATACAAATTGTAGGCCATAATGAGTGTAAGTATGCTGGATTAATTAGTTTAAAAGAATATGGTCAAAC TACTTCTGCTGGTATGCTAGATGCATTTTTGCAGTTGCCTTATGAATTGATTATTACTCAATCTTTTCGTTTTACTAATA GACAGAGTGCTATTACTAAAATGCAAATCCAGCAAAATCGTATGATACAATCTTCTGATAAAGCTGTATCACAAGTGGTG GAAATAAGTCAAGCTTTGGATGATGCTACTAGTGGTAGAATTGCTTTTGGACAACATCATTTGACAATTTTATGTGCAGA AAAAAATTTAAAAACTCTTGATAATGCATTGTCGTTAATAGAGTCAGAATTGTCTAACTGTGGAGTATATCCAGTAAGAG AAAAAATTAACCTAGAGCCAGCATTTTGGGCTCAGTTACCTGGAAATTTTGAATATGTGGTGCGTAAAGCTATAATTAGT ACATTAAATATGGCTGGGTTTGCATCTCAACATAACTATCCTGTTGGGAAAAAGTTTAATAATCATTGGGGTGAAGCAGT TACAGTATTTGATACTACTTCTGGTACTCCTTTCTTCTTTAACTTTCATATTCGTGATGTTGGTCATACTTCTATTATAG GTCCTACTGGTGGTGGAAAGACAGTACTCATGAACTTTTTATGTGCACAAGCCATGAAATTTTCACCAAGAATTTTCTTT TTTGATAAGGATTATGGTGCTGAAATTTTTATCAGAGCGATAGATGGAGTTTATATGGTTATAGAGCCTAGACATCTTAC AGGCTTTAATCCCTTACATCTTGATGATACTCCAGATAATCGTACATTTTTAATGGAATGGATTAAATCTCTAATATCAG TATTTAATGATAAACTTACTTCTGAGGATATTACTCGTATTAATGATGCAATTGAAGGTAATTTTAAATTAAAGAAGGAA CATCGGGTATTAAGTAATCTAGTGCCATTCTTAGGCTTAGATGGTCCTAATACTTTAGCTGGAGCAATATCTATGTGGCA TAGTGATGGATCTCATGCAGCAATATTTGATAATAAAGAAGATTTATTAGATTTTAATAAATCCAGGGTATTTGGTTTTG AGATGAGTCATCTATTAAAAGATCCAGTATCTCTTGCTCCTGTATTATTGTATTTATTTCATAGGATTAGTATTTCTTTA GATGGTACTCCTTCTATTATTGTTTTAGATGAGGCATGGGCTTTGATAGATAATCCAGTTTTTGCTCCTAAAATAAAAGA TTGGTTGAAAGTTTTAAGAAAGTTAAATACATTTGTAATTTTTGCTACTCAGAGTGTTGAAGATGCTAGTAAAAGTGCTA TTAGTGATACTTTAGTACAGCAAACTGCTACTCAAATATTTTTACCTAATTTAAAGGCTACTAGTGCTTATAGAAATGTG TTTATGTTGACTGAGAGAGAATATACTTTAATAAAACATACTGATCCTAGTACTAGGTTTTTCCTGGTAAAACAGGGTGT TAGTGCAGTGATTGCTAGAATTAATTTAAGTGGACTTGAGGATATAATCAGTGTGTTATCAGGTAGGACAGAGACAGTGC TAATGTTGCATGATTTGATAAAAGAGGTAGGTGATGATCCAAATGTTTGGTTGCCTATATTTTATGAACGAGCGAAGTAT GTATAA
Upstream 100 bases:
>100_bases CAAAAGAGCCGTTATTCTTAGAATTATTTATGCTGAGAATGAAGAAGTGTAGTAAATGTTTAAATAGGTTTTATCATAAT GCTAATTCTTATGATGTGAT
Downstream 100 bases:
>100_bases AAATTAATTATTGAATATTTTTAGTAAAAGAGTTGATTATGCTAAAGGCTAGTAAAAAGTTAATATGTATATTAATGTTA TTTTTAATCAATATTAACTT
Product: type IV secretion system ATPase VirB4
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MMLKLNRLQTKKRKIIAREYHESNFIPYSEHWNSSTLMTKDGSMLKVIKLSGYAFETADDEDLSIQNSIRNQMLRSISSS SFGLYFHIIRRRRNAFTEGFASDKVSSSFANYVNVKWREKHATKQSFTNDLYITIVREGGKKGMEFLSSILDKFGKGAAQ EARMKDLHAISEDLDEVTNRVFTSLRNYMPKILGIRETKHGVFSEIMEFLLQIVNCGSFQYALFPLGDVSRYLPMHRLYF GHKTIQIVGHNECKYAGLISLKEYGQTTSAGMLDAFLQLPYELIITQSFRFTNRQSAITKMQIQQNRMIQSSDKAVSQVV EISQALDDATSGRIAFGQHHLTILCAEKNLKTLDNALSLIESELSNCGVYPVREKINLEPAFWAQLPGNFEYVVRKAIIS TLNMAGFASQHNYPVGKKFNNHWGEAVTVFDTTSGTPFFFNFHIRDVGHTSIIGPTGGGKTVLMNFLCAQAMKFSPRIFF FDKDYGAEIFIRAIDGVYMVIEPRHLTGFNPLHLDDTPDNRTFLMEWIKSLISVFNDKLTSEDITRINDAIEGNFKLKKE HRVLSNLVPFLGLDGPNTLAGAISMWHSDGSHAAIFDNKEDLLDFNKSRVFGFEMSHLLKDPVSLAPVLLYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSAYRNV FMLTEREYTLIKHTDPSTRFFLVKQGVSAVIARINLSGLEDIISVLSGRTETVLMLHDLIKEVGDDPNVWLPIFYERAKY V
Sequences:
>Translated_801_residues MMLKLNRLQTKKRKIIAREYHESNFIPYSEHWNSSTLMTKDGSMLKVIKLSGYAFETADDEDLSIQNSIRNQMLRSISSS SFGLYFHIIRRRRNAFTEGFASDKVSSSFANYVNVKWREKHATKQSFTNDLYITIVREGGKKGMEFLSSILDKFGKGAAQ EARMKDLHAISEDLDEVTNRVFTSLRNYMPKILGIRETKHGVFSEIMEFLLQIVNCGSFQYALFPLGDVSRYLPMHRLYF GHKTIQIVGHNECKYAGLISLKEYGQTTSAGMLDAFLQLPYELIITQSFRFTNRQSAITKMQIQQNRMIQSSDKAVSQVV EISQALDDATSGRIAFGQHHLTILCAEKNLKTLDNALSLIESELSNCGVYPVREKINLEPAFWAQLPGNFEYVVRKAIIS TLNMAGFASQHNYPVGKKFNNHWGEAVTVFDTTSGTPFFFNFHIRDVGHTSIIGPTGGGKTVLMNFLCAQAMKFSPRIFF FDKDYGAEIFIRAIDGVYMVIEPRHLTGFNPLHLDDTPDNRTFLMEWIKSLISVFNDKLTSEDITRINDAIEGNFKLKKE HRVLSNLVPFLGLDGPNTLAGAISMWHSDGSHAAIFDNKEDLLDFNKSRVFGFEMSHLLKDPVSLAPVLLYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSAYRNV FMLTEREYTLIKHTDPSTRFFLVKQGVSAVIARINLSGLEDIISVLSGRTETVLMLHDLIKEVGDDPNVWLPIFYERAKY V >Mature_801_residues MMLKLNRLQTKKRKIIAREYHESNFIPYSEHWNSSTLMTKDGSMLKVIKLSGYAFETADDEDLSIQNSIRNQMLRSISSS SFGLYFHIIRRRRNAFTEGFASDKVSSSFANYVNVKWREKHATKQSFTNDLYITIVREGGKKGMEFLSSILDKFGKGAAQ EARMKDLHAISEDLDEVTNRVFTSLRNYMPKILGIRETKHGVFSEIMEFLLQIVNCGSFQYALFPLGDVSRYLPMHRLYF GHKTIQIVGHNECKYAGLISLKEYGQTTSAGMLDAFLQLPYELIITQSFRFTNRQSAITKMQIQQNRMIQSSDKAVSQVV EISQALDDATSGRIAFGQHHLTILCAEKNLKTLDNALSLIESELSNCGVYPVREKINLEPAFWAQLPGNFEYVVRKAIIS TLNMAGFASQHNYPVGKKFNNHWGEAVTVFDTTSGTPFFFNFHIRDVGHTSIIGPTGGGKTVLMNFLCAQAMKFSPRIFF FDKDYGAEIFIRAIDGVYMVIEPRHLTGFNPLHLDDTPDNRTFLMEWIKSLISVFNDKLTSEDITRINDAIEGNFKLKKE HRVLSNLVPFLGLDGPNTLAGAISMWHSDGSHAAIFDNKEDLLDFNKSRVFGFEMSHLLKDPVSLAPVLLYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSAYRNV FMLTEREYTLIKHTDPSTRFFLVKQGVSAVIARINLSGLEDIISVLSGRTETVLMLHDLIKEVGDDPNVWLPIFYERAKY V
Specific function: The type IV secretion system VirB/VirD4 is a major virulence determinant for subversion of human endothelial cell (HEC) function. VirB-dependent changes of HEC include massive cytoskeletal rearrangements, a proinflammatory activation by nuclear factor NF-
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 90867; Mature: 90867
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMLKLNRLQTKKRKIIAREYHESNFIPYSEHWNSSTLMTKDGSMLKVIKLSGYAFETADD CEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCEEEECCCC EDLSIQNSIRNQMLRSISSSSFGLYFHIIRRRRNAFTEGFASDKVSSSFANYVNVKWREK CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEHHH HATKQSFTNDLYITIVREGGKKGMEFLSSILDKFGKGAAQEARMKDLHAISEDLDEVTNR HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VFTSLRNYMPKILGIRETKHGVFSEIMEFLLQIVNCGSFQYALFPLGDVSRYLPMHRLYF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHC GHKTIQIVGHNECKYAGLISLKEYGQTTSAGMLDAFLQLPYELIITQSFRFTNRQSAITK CCEEEEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHCCHHEEEECCCCCCCHHHHHHH MQIQQNRMIQSSDKAVSQVVEISQALDDATSGRIAFGQHHLTILCAEKNLKTLDNALSLI HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHH ESELSNCGVYPVREKINLEPAFWAQLPGNFEYVVRKAIISTLNMAGFASQHNYPVGKKFN HHHHHHCCCCEEHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC NHWGEAVTVFDTTSGTPFFFNFHIRDVGHTSIIGPTGGGKTVLMNFLCAQAMKFSPRIFF CCCCCEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEE FDKDYGAEIFIRAIDGVYMVIEPRHLTGFNPLHLDDTPDNRTFLMEWIKSLISVFNDKLT EECCCCCEEEEEEECCEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCC SEDITRINDAIEGNFKLKKEHRVLSNLVPFLGLDGPNTLAGAISMWHSDGSHAAIFDNKE HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCHH DLLDFNKSRVFGFEMSHLLKDPVSLAPVLLYLFHRISISLDGTPSIIVLDEAWALIDNPV HHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCCCC FAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSAYRNV CCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEE FMLTEREYTLIKHTDPSTRFFLVKQGVSAVIARINLSGLEDIISVLSGRTETVLMLHDLI EEEECCCEEEEEECCCCCEEEEEHHCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH KEVGDDPNVWLPIFYERAKYV HHHCCCCCEEEEEEECCCCCC >Mature Secondary Structure MMLKLNRLQTKKRKIIAREYHESNFIPYSEHWNSSTLMTKDGSMLKVIKLSGYAFETADD CEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEEEECCEEEECCCC EDLSIQNSIRNQMLRSISSSSFGLYFHIIRRRRNAFTEGFASDKVSSSFANYVNVKWREK CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEHHH HATKQSFTNDLYITIVREGGKKGMEFLSSILDKFGKGAAQEARMKDLHAISEDLDEVTNR HHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH VFTSLRNYMPKILGIRETKHGVFSEIMEFLLQIVNCGSFQYALFPLGDVSRYLPMHRLYF HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHC GHKTIQIVGHNECKYAGLISLKEYGQTTSAGMLDAFLQLPYELIITQSFRFTNRQSAITK CCEEEEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHCCHHEEEECCCCCCCHHHHHHH MQIQQNRMIQSSDKAVSQVVEISQALDDATSGRIAFGQHHLTILCAEKNLKTLDNALSLI HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEECCCHHHHHHHHHHH ESELSNCGVYPVREKINLEPAFWAQLPGNFEYVVRKAIISTLNMAGFASQHNYPVGKKFN HHHHHHCCCCEEHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC NHWGEAVTVFDTTSGTPFFFNFHIRDVGHTSIIGPTGGGKTVLMNFLCAQAMKFSPRIFF CCCCCEEEEEECCCCCEEEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEE FDKDYGAEIFIRAIDGVYMVIEPRHLTGFNPLHLDDTPDNRTFLMEWIKSLISVFNDKLT EECCCCCEEEEEEECCEEEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCC SEDITRINDAIEGNFKLKKEHRVLSNLVPFLGLDGPNTLAGAISMWHSDGSHAAIFDNKE HHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCHH DLLDFNKSRVFGFEMSHLLKDPVSLAPVLLYLFHRISISLDGTPSIIVLDEAWALIDNPV HHHCCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCCCC FAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSAYRNV CCHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCEE FMLTEREYTLIKHTDPSTRFFLVKQGVSAVIARINLSGLEDIISVLSGRTETVLMLHDLI EEEECCCEEEEEECCCCCEEEEEHHCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH KEVGDDPNVWLPIFYERAKYV HHHCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10749166; 10882236; 7494028 [H]