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The map label for this gene is ydcN [H]

Identifier: 56965066

GI number: 56965066

Start: 3430523

End: 3431104

Strand: Direct

Name: ydcN [H]

Synonym: ABC3304

Alternate gene names: 56965066

Gene position: 3430523-3431104 (Clockwise)

Preceding gene: 56965057

Following gene: 56965069

Centisome position: 79.71

GC content: 47.59

Gene sequence:

>582_bases
GTGATCCAATTGGCGAAAGAAGAGCTTTCCAAAAATCAAGAAGCCGGCAAACAAATTGGGAAAAACCTACGGCAATTGCG
GACAAGCAAAGGAATGAGCATCGAGGCACTTGCCCAACAAATTGGTGTCAGCAAACTGACATTGCTAAAAATTGAACAAG
GGGAAGGCAACCCGACTCTATCTGTCATTTGGAAAATCGCCAACGGCCTTCATATTCCGATTACTGCCTTGCTCTCATTT
GAAGCTGATGTGGCTATCGCTCGGGCCAACAAGGCGATGAAACTCTCCAGCTCAGATGACGAGTTCATCGTTGAGCCGTT
GTTTCGCTCACAAGGGCTGATGGAATGCTATCGTGGTTATTTGCAGCCTCAATGCCGCTATGAATCAGAAGCGCACCGCC
TTGGCGTAGTCGAAACGGTAACGGTTATGGCTGGACAACTGACGATTGAAGTCGAGGGGGAAAGCCACCATTTGTCAGCC
TATGACTCGATCCATTTCAAAGGCGACCGCCCTCATGCTTACATCAATCTAGGAAAAGAGACAGCTGTGCTCCATTTTCT
CATTTCTTACTCCCTTCTTTAA

Upstream 100 bases:

>100_bases
CAACCATTGTCACACCCCCATGTATATTTAAAATTACAATATGGTATATTATAATATACCATATTATTCATTCGTTATCT
ATTACATGTTTGAGAAAGGA

Downstream 100 bases:

>100_bases
CGCCAAAAGCTGGCCATCAATCATCTGGCCAGCTTCAGGTTAGTTGCATATGCATGAACACTCCATAAAAAAAGGCACTA
AATTTCCAAATCGACGCTCT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MIQLAKEELSKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITALLSF
EADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYESEAHRLGVVETVTVMAGQLTIEVEGESHHLSA
YDSIHFKGDRPHAYINLGKETAVLHFLISYSLL

Sequences:

>Translated_193_residues
MIQLAKEELSKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITALLSF
EADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYESEAHRLGVVETVTVMAGQLTIEVEGESHHLSA
YDSIHFKGDRPHAYINLGKETAVLHFLISYSLL
>Mature_193_residues
MIQLAKEELSKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITALLSF
EADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYESEAHRLGVVETVTVMAGQLTIEVEGESHHLSA
YDSIHFKGDRPHAYINLGKETAVLHFLISYSLL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=172, Percent_Identity=32.5581395348837, Blast_Score=93, Evalue=9e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 21422; Mature: 21422

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLAKEELSKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTL
CCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCHH
SVIWKIANGLHIPITALLSFEADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGY
HHHEEHHCCCEEEHHHEECCCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCHHHHHHHH
LQPQCRYESEAHRLGVVETVTVMAGQLTIEVEGESHHLSAYDSIHFKGDRPHAYINLGKE
CCCCCCCCCHHHHCCHHHHHEEEECEEEEEECCCCCEEEEECCEEECCCCCEEEEEECCH
TAVLHFLISYSLL
HHHHHHHHHHHCC
>Mature Secondary Structure
MIQLAKEELSKNQEAGKQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTL
CCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEECCCCCCHH
SVIWKIANGLHIPITALLSFEADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGY
HHHEEHHCCCEEEHHHEECCCCCEEEEECCCEEEECCCCCCHHHHHHHHCCCHHHHHHHH
LQPQCRYESEAHRLGVVETVTVMAGQLTIEVEGESHHLSAYDSIHFKGDRPHAYINLGKE
CCCCCCCCCHHHHCCHHHHHEEEECEEEEEECCCCCEEEEECCEEECCCCCEEEEEECCH
TAVLHFLISYSLL
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]