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The map label for this gene is soxS [H]

Identifier: 56965039

GI number: 56965039

Start: 3402104

End: 3402985

Strand: Direct

Name: soxS [H]

Synonym: ABC3275

Alternate gene names: 56965039

Gene position: 3402104-3402985 (Clockwise)

Preceding gene: 56965032

Following gene: 56965040

Centisome position: 79.05

GC content: 46.15

Gene sequence:

>882_bases
ATGACAAAAAAGCCGTTGTTCCAGCAATGTCCCCAAAGCTCCGAAGCGCTTGATTGGCATCATAAGAAGCTGTTTTATCC
GACTGATTACAATGGCTATTACCATTGGCACCAAGGTTGTGAATTGCTCATTGTATTTGACGGAGCCGGCAGCGTCGTTG
TGAACCAGCAAATGTCGCCAATCAAAAAAGGCATGCTTTTTTTCTTCCAGCCCTTTCAATTGCACCATGTTGCGCCTGCT
TCGGCTGCTCCATATGAACGGGCAACGCTACATTTCGATCCATTGCATGCCGAAAAGCGCCTAACAGCTTATCCGGCGAT
GGCCCAATTTTTCCGTCAATTGAAAAACGGCTACAACCAAGATCCGTTTATTGATTTTTCTGAAGACTACTTTTACATTC
GCTCTTTATGCGACATGCATGACAAAATGGCTGAAGCAGCTTCGATCAACGAACGGGCTGAACGGGAAGAGTTGCTCTTG
ATTCAACTGCTCAGTTACATGCAGCATCAGCTAAAGGGACGGCCTCCTACAAAGAAGCTCCGCCACATTCATTACGCCGA
ACGGATTATGGGCTGGATTGAAGACCATTTAACGGAACCATTTAATCTGTCGCTACTGGCACAGGACTTGTATTTGTCCA
AGTCGTATGTTTCTAAAGTGTTTCGCCGTGAGACGGGAAGTAGCATTACCGACTATTTAACAGCGCGGCGCATGAAAGAA
GCGTGCCACCTTTTGCAAACGACGAGCTTGCCTATCGACGAAATTAGCCAGCGTATCGGTTTAACGAATGTCTCGTATTT
CATCCAAATGTTCAAGCGCAAAACCAATGCAACGCCGCACCAATACCGCTTGTCTATGAATACAGACAACAACCACGTAT
AA

Upstream 100 bases:

>100_bases
TCCCTCCTTTTGATACACATGATAGCGCTTCCACCAATGAAAAAATCATGATACAATGGAAAGAAATATTGTTTTGTTGC
ACAAAAGGAGTGCGGCAGCG

Downstream 100 bases:

>100_bases
GTAAGAATCGAAAATCCCCAACAATAGATCAGCTAAACCTACCCATGAAGACTACACTGTTTGTAAGCGCAAACAAAAGG
AGAGGGTTTAATGGATCAAG

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MTKKPLFQQCPQSSEALDWHHKKLFYPTDYNGYYHWHQGCELLIVFDGAGSVVVNQQMSPIKKGMLFFFQPFQLHHVAPA
SAAPYERATLHFDPLHAEKRLTAYPAMAQFFRQLKNGYNQDPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLL
IQLLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKE
ACHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQYRLSMNTDNNHV

Sequences:

>Translated_293_residues
MTKKPLFQQCPQSSEALDWHHKKLFYPTDYNGYYHWHQGCELLIVFDGAGSVVVNQQMSPIKKGMLFFFQPFQLHHVAPA
SAAPYERATLHFDPLHAEKRLTAYPAMAQFFRQLKNGYNQDPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLL
IQLLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKE
ACHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQYRLSMNTDNNHV
>Mature_292_residues
TKKPLFQQCPQSSEALDWHHKKLFYPTDYNGYYHWHQGCELLIVFDGAGSVVVNQQMSPIKKGMLFFFQPFQLHHVAPAS
AAPYERATLHFDPLHAEKRLTAYPAMAQFFRQLKNGYNQDPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLLI
QLLSYMQHQLKGRPPTKKLRHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKEA
CHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQYRLSMNTDNNHV

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=258, Percent_Identity=26.3565891472868, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786251, Length=279, Percent_Identity=24.0143369175627, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081928, Length=97, Percent_Identity=30.9278350515464, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34389; Mature: 34258

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKPLFQQCPQSSEALDWHHKKLFYPTDYNGYYHWHQGCELLIVFDGAGSVVVNQQMSP
CCCCCHHHHCCCCCCHHHHHHHEEECCCCCCCEEEECCCCEEEEEECCCCCEEECCCHHH
IKKGMLFFFQPFQLHHVAPASAAPYERATLHFDPLHAEKRLTAYPAMAQFFRQLKNGYNQ
HHHHHHHHCCCHHHEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
DPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLLIQLLSYMQHQLKGRPPTKKL
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ACHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQYRLSMNTDNNHV
HHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
TKKPLFQQCPQSSEALDWHHKKLFYPTDYNGYYHWHQGCELLIVFDGAGSVVVNQQMSP
CCCCHHHHCCCCCCHHHHHHHEEECCCCCCCEEEECCCCEEEEEECCCCCEEECCCHHH
IKKGMLFFFQPFQLHHVAPASAAPYERATLHFDPLHAEKRLTAYPAMAQFFRQLKNGYNQ
HHHHHHHHCCCHHHEECCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCC
DPFIDFSEDYFYIRSLCDMHDKMAEAASINERAEREELLLIQLLSYMQHQLKGRPPTKKL
CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RHIHYAERIMGWIEDHLTEPFNLSLLAQDLYLSKSYVSKVFRRETGSSITDYLTARRMKE
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ACHLLQTTSLPIDEISQRIGLTNVSYFIQMFKRKTNATPHQYRLSMNTDNNHV
HHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]