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The map label for this gene is yvkB [H]

Identifier: 56964951

GI number: 56964951

Start: 3310241

End: 3310921

Strand: Direct

Name: yvkB [H]

Synonym: ABC3187

Alternate gene names: 56964951

Gene position: 3310241-3310921 (Clockwise)

Preceding gene: 56964950

Following gene: 56964953

Centisome position: 76.91

GC content: 37.74

Gene sequence:

>681_bases
ATGAACAACGACGACAATAGTCCATCAATAACAGAAGCATTTCAGCTTTTCTTAGATTCGCTAAATGAATCGAAGAAAAA
AACAGCAAAACAAGAACAAATTATCCAAGCAGCTGCCAAGCTATTCGCAGAAAAAGGGTATGAGGCTAGTTCAACTGCCG
ATATCGCTAAACAGGCTGGCGTTGCCGAAGTAACATTGTTCCGTAACTTCAAGTCAAAGTCAAATCTGTTGTACCATATT
TTAGCACCTGTTTTTATTGAACTTGGTTCAAAAAAATATGTGGAAACGATTCAAGAGATTTTCCGTGCACCTGAGCCAAA
TAATGCGAAAGAAACGTTGACAATGGCTTTTCAAGACAGGCTGGAACAGCTTGCTCAAAACCAATCGATTATAAAAGTCC
TCTTTCGAGAAGCTTATTCACAGGACGAAATTAAGAAAGCAATTGTAACGAACATCACTAGTCCTGCGATGGAATCGACA
AAATCATTTATTAAGCAAAAACAAGAACAAGGTGAGTTTAAGGACATGGATGAGTCTGTTATTGCCAATTTATTTTTTTA
TATCATCTTCGGCTATATCTTTTACCACCAAGTTCTTGGCGAAGGGCTTCAACCTGAGCACGGGGATGAACCTGAAAAAA
TGATCGACATTATTTTGGAAGGAATTTCCACTAAGAAATAA

Upstream 100 bases:

>100_bases
CTATGGCCGCAAAGTTTTGTATTGCTCGGATTTACCGTTCTGCTTTCCATCGCAACAATTGCAAAATTTAAAAAGCATCT
CCAGTAAATAGGTGATCAAA

Downstream 100 bases:

>100_bases
TTCCGTACGATTGTTTTTAGCATGGCTAGGAAGCGACATTCTGTTCGTTTCCTGGCCATTCGAAAAGATGAAGTCTATTT
ATAGCAAAATCTAGCAAATC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNNDDNSPSITEAFQLFLDSLNESKKKTAKQEQIIQAAAKLFAEKGYEASSTADIAKQAGVAEVTLFRNFKSKSNLLYHI
LAPVFIELGSKKYVETIQEIFRAPEPNNAKETLTMAFQDRLEQLAQNQSIIKVLFREAYSQDEIKKAIVTNITSPAMEST
KSFIKQKQEQGEFKDMDESVIANLFFYIIFGYIFYHQVLGEGLQPEHGDEPEKMIDIILEGISTKK

Sequences:

>Translated_226_residues
MNNDDNSPSITEAFQLFLDSLNESKKKTAKQEQIIQAAAKLFAEKGYEASSTADIAKQAGVAEVTLFRNFKSKSNLLYHI
LAPVFIELGSKKYVETIQEIFRAPEPNNAKETLTMAFQDRLEQLAQNQSIIKVLFREAYSQDEIKKAIVTNITSPAMEST
KSFIKQKQEQGEFKDMDESVIANLFFYIIFGYIFYHQVLGEGLQPEHGDEPEKMIDIILEGISTKK
>Mature_226_residues
MNNDDNSPSITEAFQLFLDSLNESKKKTAKQEQIIQAAAKLFAEKGYEASSTADIAKQAGVAEVTLFRNFKSKSNLLYHI
LAPVFIELGSKKYVETIQEIFRAPEPNNAKETLTMAFQDRLEQLAQNQSIIKVLFREAYSQDEIKKAIVTNITSPAMEST
KSFIKQKQEQGEFKDMDESVIANLFFYIIFGYIFYHQVLGEGLQPEHGDEPEKMIDIILEGISTKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25632; Mature: 25632

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNDDNSPSITEAFQLFLDSLNESKKKTAKQEQIIQAAAKLFAEKGYEASSTADIAKQAG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
VAEVTLFRNFKSKSNLLYHILAPVFIELGSKKYVETIQEIFRAPEPNNAKETLTMAFQDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LEQLAQNQSIIKVLFREAYSQDEIKKAIVTNITSPAMESTKSFIKQKQEQGEFKDMDESV
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
IANLFFYIIFGYIFYHQVLGEGLQPEHGDEPEKMIDIILEGISTKK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNNDDNSPSITEAFQLFLDSLNESKKKTAKQEQIIQAAAKLFAEKGYEASSTADIAKQAG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
VAEVTLFRNFKSKSNLLYHILAPVFIELGSKKYVETIQEIFRAPEPNNAKETLTMAFQDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LEQLAQNQSIIKVLFREAYSQDEIKKAIVTNITSPAMESTKSFIKQKQEQGEFKDMDESV
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
IANLFFYIIFGYIFYHQVLGEGLQPEHGDEPEKMIDIILEGISTKK
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]