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The map label for this gene is ywqM [H]

Identifier: 56964953

GI number: 56964953

Start: 3311741

End: 3312613

Strand: Direct

Name: ywqM [H]

Synonym: ABC3189

Alternate gene names: 56964953

Gene position: 3311741-3312613 (Clockwise)

Preceding gene: 56964951

Following gene: 56964955

Centisome position: 76.95

GC content: 41.01

Gene sequence:

>873_bases
ATGGAGCTGCGTCACTTGAACACGTTTAAAACAATTGTAGATACCGGTGGATTTAAAAAAGCCGCCGATTCCCTTGGTTA
TGCCCAATCATCTGTTACGAACCACATTAAGGAATTAGAGAATGAACTTGGGTACTTGCTTTTCGACCGTTTAGGCAAAC
AAGTGGTGTTGACACAAGCAGGTAAACGTTTTTTGCCATATGCCCTTGAAATTATTGATCTTTATGCCAAGTCTAAAGAA
GCCGTCCTTAACACAGTTGATCTAGCAGGAGAATTGACCATTGGCGTAAGTGAATCATTGCTGTTATATTGGCTTCCGAC
CTTTATTACGAACTTTACAAAAACCTACCCTAAAGTTGAATTAACGCTTAAATTGATTGATTACCAACATCTCACAACTC
AACTAAAAAAAGGCGAAATCGAAGCAGCTATTCTTGTCGAATCAAATCAGTGGCAACCTAAAGCACTTTCTTTCGAGAAA
ATTAGTAGTGACACATTAATACTTGTCGAAACAGCTGACCATGCGTTCCGTAACATCCCTGAAACCATGCTCGTTACGGA
ATATGCTTGCAGTTGGCGCCCGATCATTGAGCAGTATTTATCTGAGGAAGCGCAATTTGGCATGAAAAAGATCGAATTTC
CAAGCATCGAGGCAATCAAAAAATGTGTCGAATGCGGATTAGGCCAATCTTTTTTGCCTCAATTCGCCGTTCGCGATGCC
CTAGCAGAAGGCACTTTAAAAGAAGTGCCGACAAAGGCGCCCATAGAACCCATCGGCATTTACGCTGCTTATCACAAAAA
TAAATGGGTTTCGCGAAAGTTAGAGACATTTATTAGCGCATTGCGGGAGCAAAAAGATTGGTTTCATAGTTAA

Upstream 100 bases:

>100_bases
CTTTGCTAATGTGTACTGAAAAGTTTATAATACAGTCGTGATTCTGTAAAATTGAACTTTCGAATTAAAACGATCATTAA
TATTGATAGGAGTCTACTAC

Downstream 100 bases:

>100_bases
CAATCAGCTCTGATTTAATTGTTTGACTGCTACTAACACAAAACTGGCACCGGGAATTCCCGATGCCAGTTAGCGATTGT
TTAGCTGTTGTTCTTTTGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MELRHLNTFKTIVDTGGFKKAADSLGYAQSSVTNHIKELENELGYLLFDRLGKQVVLTQAGKRFLPYALEIIDLYAKSKE
AVLNTVDLAGELTIGVSESLLLYWLPTFITNFTKTYPKVELTLKLIDYQHLTTQLKKGEIEAAILVESNQWQPKALSFEK
ISSDTLILVETADHAFRNIPETMLVTEYACSWRPIIEQYLSEEAQFGMKKIEFPSIEAIKKCVECGLGQSFLPQFAVRDA
LAEGTLKEVPTKAPIEPIGIYAAYHKNKWVSRKLETFISALREQKDWFHS

Sequences:

>Translated_290_residues
MELRHLNTFKTIVDTGGFKKAADSLGYAQSSVTNHIKELENELGYLLFDRLGKQVVLTQAGKRFLPYALEIIDLYAKSKE
AVLNTVDLAGELTIGVSESLLLYWLPTFITNFTKTYPKVELTLKLIDYQHLTTQLKKGEIEAAILVESNQWQPKALSFEK
ISSDTLILVETADHAFRNIPETMLVTEYACSWRPIIEQYLSEEAQFGMKKIEFPSIEAIKKCVECGLGQSFLPQFAVRDA
LAEGTLKEVPTKAPIEPIGIYAAYHKNKWVSRKLETFISALREQKDWFHS
>Mature_290_residues
MELRHLNTFKTIVDTGGFKKAADSLGYAQSSVTNHIKELENELGYLLFDRLGKQVVLTQAGKRFLPYALEIIDLYAKSKE
AVLNTVDLAGELTIGVSESLLLYWLPTFITNFTKTYPKVELTLKLIDYQHLTTQLKKGEIEAAILVESNQWQPKALSFEK
ISSDTLILVETADHAFRNIPETMLVTEYACSWRPIIEQYLSEEAQFGMKKIEFPSIEAIKKCVECGLGQSFLPQFAVRDA
LAEGTLKEVPTKAPIEPIGIYAAYHKNKWVSRKLETFISALREQKDWFHS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=32.7586206896552, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=26.6666666666667, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788748, Length=301, Percent_Identity=23.9202657807309, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790399, Length=296, Percent_Identity=24.6621621621622, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=142, Percent_Identity=30.2816901408451, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786401, Length=298, Percent_Identity=25.8389261744966, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788887, Length=296, Percent_Identity=24.6621621621622, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI145693105, Length=258, Percent_Identity=25.968992248062, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787879, Length=247, Percent_Identity=27.1255060728745, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87081904, Length=299, Percent_Identity=24.0802675585284, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787806, Length=239, Percent_Identity=23.4309623430962, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788296, Length=141, Percent_Identity=34.7517730496454, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI48994962, Length=152, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789173, Length=169, Percent_Identity=27.2189349112426, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790208, Length=258, Percent_Identity=25.968992248062, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=26.8965517241379, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786508, Length=252, Percent_Identity=22.2222222222222, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786713, Length=268, Percent_Identity=24.6268656716418, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788706, Length=320, Percent_Identity=24.6875, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788626, Length=144, Percent_Identity=27.7777777777778, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32914; Mature: 32914

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRHLNTFKTIVDTGGFKKAADSLGYAQSSVTNHIKELENELGYLLFDRLGKQVVLTQA
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHC
GKRFLPYALEIIDLYAKSKEAVLNTVDLAGELTIGVSESLLLYWLPTFITNFTKTYPKVE
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEE
LTLKLIDYQHLTTQLKKGEIEAAILVESNQWQPKALSFEKISSDTLILVETADHAFRNIP
EEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCCCCEEEEECCHHHHHCCC
ETMLVTEYACSWRPIIEQYLSEEAQFGMKKIEFPSIEAIKKCVECGLGQSFLPQFAVRDA
HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LAEGTLKEVPTKAPIEPIGIYAAYHKNKWVSRKLETFISALREQKDWFHS
HHCCHHHHCCCCCCCCHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELRHLNTFKTIVDTGGFKKAADSLGYAQSSVTNHIKELENELGYLLFDRLGKQVVLTQA
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHC
GKRFLPYALEIIDLYAKSKEAVLNTVDLAGELTIGVSESLLLYWLPTFITNFTKTYPKVE
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEE
LTLKLIDYQHLTTQLKKGEIEAAILVESNQWQPKALSFEKISSDTLILVETADHAFRNIP
EEEEEHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHCCCCCEEEEECCHHHHHCCC
ETMLVTEYACSWRPIIEQYLSEEAQFGMKKIEFPSIEAIKKCVECGLGQSFLPQFAVRDA
HHHHHHHHHCCHHHHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
LAEGTLKEVPTKAPIEPIGIYAAYHKNKWVSRKLETFISALREQKDWFHS
HHCCHHHHCCCCCCCCHHHEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]