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The map label for this gene is ykoV [H]

Identifier: 56963367

GI number: 56963367

Start: 1726717

End: 1727553

Strand: Direct

Name: ykoV [H]

Synonym: ABC1602

Alternate gene names: 56963367

Gene position: 1726717-1727553 (Clockwise)

Preceding gene: 56963365

Following gene: 56963368

Centisome position: 40.12

GC content: 43.25

Gene sequence:

>837_bases
ATGCATACAGTTTGGAAAGGCAGCATCCAGTTCGGGCTTGTTCATATTCCTGTTAAGCTGCACACGGCAACCGAAAACAA
AGACATCAAAATGCGTCAGCTCCATAAAAAGTGCCATACGCCAATCTCTTATGAGAAAAGGTGTCGCCACTGCGAGGAAG
CAGTAGAGGCAGACGATATTGTCAAAGCATACGAATACGCGAAAAACAAATTTGTTGTTATTGAAGCAGAAGAACTTGAG
CAGTTTCGAAAAGACAACGAAGACAAAGCGGTGCAAATTCTTGATTTTGTCCAATTGGAGGAAGTCGACCCGATTTATTT
TGACCGTTCTTATTTTTTAGCGCCAGGGGATGGTGGCTCCAAAGCCTACGCATTGTTGCAAAGGGCGCTTGCTGATTCTA
AAAAAATTGGCATTGGCAAAATTATCATTCGCGCGAAAGAACATTTGGCAATTGTCCGTACGTACGGCAACGCCTTAATG
ATGGAGACGATTTATTTTCCTGATGAGGTGCGGAAGCTTGCTGATGTCCCTAATTTGCCAGAAGCGCCTAAAGTAGAAGA
AAAAGAACTAAAGACGGCGTTGCTTTTAATTGACCAGCTTACCAGTGAATTTGACCCAGAGTCATACACGGATGAATACC
GGGAGCAGCTTTTTGATCTAATTGAACAAAAAAAGCAAGGAAACAAAATGGTTGTTTCGGAACCAAAAGAAGCCGAACGG
GACACGAATGTGACCGATTTAATGTCAGCGCTAGAGGCGTCATTAGAGCGGACAAAGCCGAAACGGAAAAAAGCAGCTGC
ATCAAAACGAAAAACAGCAACGAAGAAAAACGCATAA

Upstream 100 bases:

>100_bases
TCATTGGTTTCATTTGCGCTACCTCCTAGCTATAGAGTAACCAAACCTTTCCTGTGATATTAATGGCGTTTGCGCCGTAT
AGTAAGAGTGAGGTGAAATC

Downstream 100 bases:

>100_bases
CCAGACGGATCGAAAACGCTTTGTCAATCAAGACAAAGAAAACCAGCCGGCATTGCCAGCTGGTTTTTTCAGTTTTAAGT
CGTGAAATCTTCCTTAAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MHTVWKGSIQFGLVHIPVKLHTATENKDIKMRQLHKKCHTPISYEKRCRHCEEAVEADDIVKAYEYAKNKFVVIEAEELE
QFRKDNEDKAVQILDFVQLEEVDPIYFDRSYFLAPGDGGSKAYALLQRALADSKKIGIGKIIIRAKEHLAIVRTYGNALM
METIYFPDEVRKLADVPNLPEAPKVEEKELKTALLLIDQLTSEFDPESYTDEYREQLFDLIEQKKQGNKMVVSEPKEAER
DTNVTDLMSALEASLERTKPKRKKAAASKRKTATKKNA

Sequences:

>Translated_278_residues
MHTVWKGSIQFGLVHIPVKLHTATENKDIKMRQLHKKCHTPISYEKRCRHCEEAVEADDIVKAYEYAKNKFVVIEAEELE
QFRKDNEDKAVQILDFVQLEEVDPIYFDRSYFLAPGDGGSKAYALLQRALADSKKIGIGKIIIRAKEHLAIVRTYGNALM
METIYFPDEVRKLADVPNLPEAPKVEEKELKTALLLIDQLTSEFDPESYTDEYREQLFDLIEQKKQGNKMVVSEPKEAER
DTNVTDLMSALEASLERTKPKRKKAAASKRKTATKKNA
>Mature_278_residues
MHTVWKGSIQFGLVHIPVKLHTATENKDIKMRQLHKKCHTPISYEKRCRHCEEAVEADDIVKAYEYAKNKFVVIEAEELE
QFRKDNEDKAVQILDFVQLEEVDPIYFDRSYFLAPGDGGSKAYALLQRALADSKKIGIGKIIIRAKEHLAIVRTYGNALM
METIYFPDEVRKLADVPNLPEAPKVEEKELKTALLLIDQLTSEFDPESYTDEYREQLFDLIEQKKQGNKMVVSEPKEAER
DTNVTDLMSALEASLERTKPKRKKAAASKRKTATKKNA

Specific function: Could be involved in DNA repair during spore germination [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Spore core. Note=Expressed in the center of the spore core, presumably with the nucleoid [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 31901; Mature: 31901

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTVWKGSIQFGLVHIPVKLHTATENKDIKMRQLHKKCHTPISYEKRCRHCEEAVEADDI
CCCEECCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VKAYEYAKNKFVVIEAEELEQFRKDNEDKAVQILDFVQLEEVDPIYFDRSYFLAPGDGGS
HHHHHHHCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCEEEECCCCCCH
KAYALLQRALADSKKIGIGKIIIRAKEHLAIVRTYGNALMMETIYFPDEVRKLADVPNLP
HHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCCCC
EAPKVEEKELKTALLLIDQLTSEFDPESYTDEYREQLFDLIEQKKQGNKMVVSEPKEAER
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
DTNVTDLMSALEASLERTKPKRKKAAASKRKTATKKNA
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHTVWKGSIQFGLVHIPVKLHTATENKDIKMRQLHKKCHTPISYEKRCRHCEEAVEADDI
CCCEECCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
VKAYEYAKNKFVVIEAEELEQFRKDNEDKAVQILDFVQLEEVDPIYFDRSYFLAPGDGGS
HHHHHHHCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCEEEECCCCCCH
KAYALLQRALADSKKIGIGKIIIRAKEHLAIVRTYGNALMMETIYFPDEVRKLADVPNLP
HHHHHHHHHHHCCCCCCHHHHEEEHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHCCCCCC
EAPKVEEKELKTALLLIDQLTSEFDPESYTDEYREQLFDLIEQKKQGNKMVVSEPKEAER
CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
DTNVTDLMSALEASLERTKPKRKKAAASKRKTATKKNA
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]