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The map label for this gene is yqgF [C]

Identifier: 56963359

GI number: 56963359

Start: 1720059

End: 1720487

Strand: Direct

Name: yqgF [C]

Synonym: ABC1594

Alternate gene names: 56963359

Gene position: 1720059-1720487 (Clockwise)

Preceding gene: 56963358

Following gene: 56963360

Centisome position: 39.97

GC content: 45.92

Gene sequence:

>429_bases
ATGAAAACAATCGGCTTAGACGTAGGGACAAAAACAATTGGTGTCGCCATTAGTGATGCGTTCGGGTGGACAGCGCAAGG
ACTGCCGACGATCCAACGATCTGAAGACGACCCAAACCGTGATTTTGAAGCACTAGCTCAGCTGATCAAAGAGAATGACG
TCCAAAAAGTGGTGATTGGTTATCCTAAAAACATGAACGGCACGGTTGGGGAAAGCGCCACACGGAGTGAGACATTCGCG
CGAACACTTGAACAACAGTGCAATGTGCAGACCGTTTTATGGGATGAACGTCTTACAACAGCTGCAGCTCAGCGCGTTTT
AATTGATGCAGATGTAAGTCGAAAAAAACGCAAAAAAGCTGTAGACAAAATGGCTGCTGTATTCATTTTACAAGGATATT
TAGACCGCCAAAGCCACACACTGACATAG

Upstream 100 bases:

>100_bases
GGCATAAAGATGCCCGCACGCTAATCCGCAAATTAGAACGAGACGAGCTAATTGAAACGCTTGTGAAGTCGTACTTGCGG
TCCCATGGCAAGGAAAACAA

Downstream 100 bases:

>100_bases
AACAAACCATTTAGCAAAGCGAGGGAAAGAAAATGGCTCAAGAAGAAAAAGAGCGTTTTGTCATTCCAGATGAGAATGGC
ACAGAACATCTATTTGATGA

Product: holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKNMNGTVGESATRSETFA
RTLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDKMAAVFILQGYLDRQSHTLT

Sequences:

>Translated_142_residues
MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKNMNGTVGESATRSETFA
RTLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDKMAAVFILQGYLDRQSHTLT
>Mature_142_residues
MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIGYPKNMNGTVGESATRSETFA
RTLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKAVDKMAAVFILQGYLDRQSHTLT

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=33.8345864661654, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BACSK (Q5WHM6)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_175090.1
- ProteinModelPortal:   Q5WHM6
- SMR:   Q5WHM6
- STRING:   Q5WHM6
- EnsemblBacteria:   EBBACT00000046767
- GeneID:   3201245
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC1594
- NMPDR:   fig|66692.3.peg.1556
- eggNOG:   COG0816
- GeneTree:   EBGT00050000001393
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- BioCyc:   BCLA66692:ABC1594-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15726; Mature: 15726

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIG
CCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
YPKNMNGTVGESATRSETFARTLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHH
VDKMAAVFILQGYLDRQSHTLT
HHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKTIGLDVGTKTIGVAISDAFGWTAQGLPTIQRSEDDPNRDFEALAQLIKENDVQKVVIG
CCEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
YPKNMNGTVGESATRSETFARTLEQQCNVQTVLWDERLTTAAAQRVLIDADVSRKKRKKA
CCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHH
VDKMAAVFILQGYLDRQSHTLT
HHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA