| Definition | Bacillus clausii KSM-K16, complete genome. |
|---|---|
| Accession | NC_006582 |
| Length | 4,303,871 |
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The map label for this gene is recJ [H]
Identifier: 56963333
GI number: 56963333
Start: 1688060
End: 1690417
Strand: Direct
Name: recJ [H]
Synonym: ABC1568
Alternate gene names: 56963333
Gene position: 1688060-1690417 (Clockwise)
Preceding gene: 56963332
Following gene: 56963334
Centisome position: 39.22
GC content: 47.92
Gene sequence:
>2358_bases ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC GGTCTGGATTTTATTATCACTGACCACCATGAGCCGCCGCCGGTTTTGCCAGAAGCATTGGCGATCATTAATCCTAAGCA GCCTGGTTGCCCGTATCCATTTAAAGAGCTTGCCGGCGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC TGCCTGAAGAGCTGCTCGATTACGCTGTGATCGGCACGATCGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC CAGCTGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCCAAAGGCTCGGCCAGAAGCATCGAAGGGTTTGACATGTAC CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT GCCAACCGTAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC CACATGCAAAGTTATCGGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGCTTAAACAGCCGGTTGCTTGACTT GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT ACCGGCAAGCGCCTTCCTTTTTTGAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAAGTCTT TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAACCCAAA CCGCGAGCAGTTCAAATGGTATTATGGTTTTATAAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCTAAGCTTG AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC GACAGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAAGAAAA AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGAAGGGAGCG CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA
Upstream 100 bases:
>100_bases GCCGTCAAAAAAAAGACATGAAAAAACAGAGTCATTGAAATGCGTTGTCACCCCTTAGCCCCTCCTGTATAATAGGATGG TCGAGGGGTGTTTTTTACAT
Downstream 100 bases:
>100_bases ACAATATATAACAATTGTCGAAGATTGGCCGCAAGAGGGCATACGCTTTAAAGACATTACGACGTTGATGCAAAACGGCA CAGCCTACAAGCGCGCCGTT
Product: single-strand DNA-specific exonuclease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 785; Mature: 785
Protein sequence:
>785_residues MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESL FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL
Sequences:
>Translated_785_residues MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESL FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL >Mature_785_residues MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESL FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=585, Percent_Identity=35.3846153846154, Blast_Score=304, Evalue=2e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 87828; Mature: 87828
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDP CCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH FLLKGMEETIERIALAVKRKERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFT HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC EGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDIGLDFIITDHHEPPPVLPEAL CCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHH AIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL HHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHH AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLL HHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEE ADDEEEAKALATEIDSLNKERQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVI CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHH GIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMYQELANNRDILPHFGGHPMAA HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC GMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV CCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSA CCCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE IGTVSLNEWNGKVKPQLIIDDLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEG EEEEEEECCCCCCCCEEEEHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHEEEEEECCC TKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESLFSKKGEPSRVYVVFSEEEES CHHHCCCCCCCHHCCCCCHHHEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCHH FFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEC DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEES HHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH ILNGL HHCCC >Mature Secondary Structure MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDP CCCCCCHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH FLLKGMEETIERIALAVKRKERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFT HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCC EGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDIGLDFIITDHHEPPPVLPEAL CCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHH AIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL HHCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHH AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLL HHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEEEE ADDEEEAKALATEIDSLNKERQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVI CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHH GIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMYQELANNRDILPHFGGHPMAA HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC GMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV CCEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSA CCCCCEEEEECCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE IGTVSLNEWNGKVKPQLIIDDLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEG EEEEEEECCCCCCCCEEEEHHHHHHHEEECCCCCCCCCHHHHHHHHCCCHHEEEEEECCC TKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESLFSKKGEPSRVYVVFSEEEES CHHHCCCCCCCHHCCCCCHHHEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEECCCHH FFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEC DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEES HHHHHHHCCCCCCCEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH ILNGL HHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]