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The map label for this gene is yhaM

Identifier: 56963290

GI number: 56963290

Start: 1647738

End: 1648697

Strand: Direct

Name: yhaM

Synonym: ABC1525

Alternate gene names: 56963290

Gene position: 1647738-1648697 (Clockwise)

Preceding gene: 56963289

Following gene: 56963291

Centisome position: 38.29

GC content: 42.92

Gene sequence:

>960_bases
ATGGCAAAAGGCATTAGACATCATCGAGTGGGGGAAGCGGTAGATGGTTATTTATTAATTAAAACCGCCACAAAACAAAT
CGCTAGCAACTCAAAGCCTTTTTTGACGTTGATTCTTGGCGACCATACCGGTGAAATTGAGGCTAAACTTTGGGGGATTT
CCCCAGAAGATGAAGCGACCTTTGTCAATAAAACAATTGTCCATATCCAAGGAGACGTGATTGACTATCGGGGGCGGCTT
CAGCTTAAAATTGCCAGCATCCGCCCAACATCAGCGATGGATGGCGTTCACTTAAATGATTTTGTCCGATCAGCTCCCTT
GGCGCCAAATGATATGCTCGATGAAGTCAATCAATACATTTTTGAAATCCATAATCCCCATATCCAACGGATTACACGCT
TTCTCCTAAAAAAACACCAACAGGCATTTTTAGAATCGCCAGCGGCTACAAAAAACCATCATGAGTTTATGTCCGGCTTG
GCATTCCATGTCGTATCGATGCTACGGATTGGCAAAAGCTTAATAGAGCTTTATCCAACTCTTGACAAAGACTTGCTTTA
CGCAGGCATCATTTTGCACGATTTAGGCAAAGTTCGTGAGCTATCTGGCGCGATTGATACTACCTATACGTTAGAAGGAA
AGCTTCTTGGCCATATTTCCATCATGTCCAATGAAATTGCTCAAGCTGCCAAAGAGCTAGAAATTGACGGGGAAGAGGTT
CTTATTCTTCAGCATCTTATTTTAAGTCACCATGGGAAAGGGGAATGGGGCAGTCCAAAAACCCCTGTAGTGAGGGAGGC
GGAAGTTCTCCATTTAATTGATAATATTGATGCGAAGATTAATATGATGGATCGGGCGCTTGAACGGGTACAGCCAGGAG
AGTTTTCGGAACGGGTTATGGCTCTTGATAATCGCAGTTTTTATAAACCGAGCTTTCATAAAAAGCCAATAGAGTTATAG

Upstream 100 bases:

>100_bases
AGAGCGCTAGCCTACGGGTGCGCTCTTTTTGTTTTCAACCCCTTTAAAGCGAATCGTATGCTATACTGAAAGGAAGATTA
GAAGCTTAAGAGGTGAGACG

Downstream 100 bases:

>100_bases
GTTCCAACGGTTAAACCTAATACCCTCGTTCCCATGCTTGGAATCCCGTCATTCATGAACGCTATTCTCGGTTTCACACG
GATTGGGACATCGGCAGACA

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MAKGIRHHRVGEAVDGYLLIKTATKQIASNSKPFLTLILGDHTGEIEAKLWGISPEDEATFVNKTIVHIQGDVIDYRGRL
QLKIASIRPTSAMDGVHLNDFVRSAPLAPNDMLDEVNQYIFEIHNPHIQRITRFLLKKHQQAFLESPAATKNHHEFMSGL
AFHVVSMLRIGKSLIELYPTLDKDLLYAGIILHDLGKVRELSGAIDTTYTLEGKLLGHISIMSNEIAQAAKELEIDGEEV
LILQHLILSHHGKGEWGSPKTPVVREAEVLHLIDNIDAKINMMDRALERVQPGEFSERVMALDNRSFYKPSFHKKPIEL

Sequences:

>Translated_319_residues
MAKGIRHHRVGEAVDGYLLIKTATKQIASNSKPFLTLILGDHTGEIEAKLWGISPEDEATFVNKTIVHIQGDVIDYRGRL
QLKIASIRPTSAMDGVHLNDFVRSAPLAPNDMLDEVNQYIFEIHNPHIQRITRFLLKKHQQAFLESPAATKNHHEFMSGL
AFHVVSMLRIGKSLIELYPTLDKDLLYAGIILHDLGKVRELSGAIDTTYTLEGKLLGHISIMSNEIAQAAKELEIDGEEV
LILQHLILSHHGKGEWGSPKTPVVREAEVLHLIDNIDAKINMMDRALERVQPGEFSERVMALDNRSFYKPSFHKKPIEL
>Mature_318_residues
AKGIRHHRVGEAVDGYLLIKTATKQIASNSKPFLTLILGDHTGEIEAKLWGISPEDEATFVNKTIVHIQGDVIDYRGRLQ
LKIASIRPTSAMDGVHLNDFVRSAPLAPNDMLDEVNQYIFEIHNPHIQRITRFLLKKHQQAFLESPAATKNHHEFMSGLA
FHVVSMLRIGKSLIELYPTLDKDLLYAGIILHDLGKVRELSGAIDTTYTLEGKLLGHISIMSNEIAQAAKELEIDGEEVL
ILQHLILSHHGKGEWGSPKTPVVREAEVLHLIDNIDAKINMMDRALERVQPGEFSERVMALDNRSFYKPSFHKKPIEL

Specific function: Shows a 3'-5' exoribonuclease activity

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YHAM_BACSK (Q5WHU5)

Other databases:

- EMBL:   AP006627
- RefSeq:   YP_175021.1
- ProteinModelPortal:   Q5WHU5
- STRING:   Q5WHU5
- EnsemblBacteria:   EBBACT00000047722
- GeneID:   3203714
- GenomeReviews:   AP006627_GR
- KEGG:   bcl:ABC1525
- NMPDR:   fig|66692.3.peg.1899
- eggNOG:   COG3481
- GeneTree:   EBGT00050000001853
- HOGENOM:   HBG712169
- OMA:   IAFTFQD
- ProtClustDB:   PRK13480
- BioCyc:   BCLA66692:ABC1525-MONOMER
- HAMAP:   MF_01427
- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- Gene3D:   G3DSA:2.40.50.140
- SMART:   SM00471

Pfam domain/function: PF01336 tRNA_anti; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 35888; Mature: 35757

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKGIRHHRVGEAVDGYLLIKTATKQIASNSKPFLTLILGDHTGEIEAKLWGISPEDEAT
CCCCCCHHHCCHHHCCEEEEEEHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCHH
FVNKTIVHIQGDVIDYRGRLQLKIASIRPTSAMDGVHLNDFVRSAPLAPNDMLDEVNQYI
HHEEEEEEEECCEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
FEIHNPHIQRITRFLLKKHQQAFLESPAATKNHHEFMSGLAFHVVSMLRIGKSLIELYPT
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDKDLLYAGIILHDLGKVRELSGAIDTTYTLEGKLLGHISIMSNEIAQAAKELEIDGEEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEHHHHHHHHHHHHHHCCCCCCHH
LILQHLILSHHGKGEWGSPKTPVVREAEVLHLIDNIDAKINMMDRALERVQPGEFSERVM
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHH
ALDNRSFYKPSFHKKPIEL
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKGIRHHRVGEAVDGYLLIKTATKQIASNSKPFLTLILGDHTGEIEAKLWGISPEDEAT
CCCCCHHHCCHHHCCEEEEEEHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCCCHH
FVNKTIVHIQGDVIDYRGRLQLKIASIRPTSAMDGVHLNDFVRSAPLAPNDMLDEVNQYI
HHEEEEEEEECCEEECCCEEEEEEEEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
FEIHNPHIQRITRFLLKKHQQAFLESPAATKNHHEFMSGLAFHVVSMLRIGKSLIELYPT
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDKDLLYAGIILHDLGKVRELSGAIDTTYTLEGKLLGHISIMSNEIAQAAKELEIDGEEV
CCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEEHHHHHHHHHHHHHHCCCCCCHH
LILQHLILSHHGKGEWGSPKTPVVREAEVLHLIDNIDAKINMMDRALERVQPGEFSERVM
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHH
ALDNRSFYKPSFHKKPIEL
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA