| Definition | Bacillus clausii KSM-K16, complete genome. |
|---|---|
| Accession | NC_006582 |
| Length | 4,303,871 |
Click here to switch to the map view.
The map label for this gene is ydaD [H]
Identifier: 56963249
GI number: 56963249
Start: 1603913
End: 1604782
Strand: Direct
Name: ydaD [H]
Synonym: ABC1484
Alternate gene names: 56963249
Gene position: 1603913-1604782 (Clockwise)
Preceding gene: 56963247
Following gene: 56963254
Centisome position: 37.27
GC content: 48.62
Gene sequence:
>870_bases ATGGACTTACACAATTATTTAGCAAACGGCATTCCGCCGCAAAAACAAGACAAGCAACCAGGGGATGAAGCGGTGATGGA ACCGCGCCCGATCTATGAAGACGACGATTACAAAGGTACAGGAAAACTTCGCGGCAAAGTAGCGCTTATTACTGGTGGCG ATTCGGGTATCGGCCGCGCCGTGGCAGTTGGGTATGCCAAAGAAGGCGCCCATATTGCGATCGTCTATTTAGATGAGCAT GAAGACGCAGAACAAACAAAGCAGCGCGTCGAGCAAGAAGGTGTTCAGTGCATTACAATTTCTGGCGACATAAGTGATGA AACGTTTTGTAAGGAGAGCGTTGAACGTACAGTCACAGAACTTGGCTGCCTAGATATTTTAGTCAACAACGCTGCAGAGC AACATCCAGTCAACGATTTACGGGAACTAACAGCCGAACAGCTTCACCGTACATTCGCGACCAATTTCTATTCGTATGTG TATTATACGAAAGCAGCGCTTGATTATTTGAAGCCTGGCAGCGCTATTATCAATACGTCTTCCATTAATGCCTATCGGGG CAACGTGACGTTGATTGATTATACGAGTACCAAAGGCGCCATTACAGCCTTTACCCGTTCAATGGCGCAGGCGCTTGCTT CAAAGCATATCCGCGTAAACAGCGTAGCCCCTGGCCCGATCTGGACGCCGTTGATTCCTGCTTCTTTTGACGAGCAGAAA GTGTCTGAGTTTGGCACAACGACGCCAATGGGACGAGCAGGGCAGCCGAGTGAACTTGTCGGTGCCTATGTACTCCTCGC TTCTAACGACTCTTCCTACATGACCGGACAGGCGATCCATATTAATGGCGGGGATTATATTAGTTCATAA
Upstream 100 bases:
>100_bases ATTTCAGGTGGTTTAACGGATGAAAAGTGCTGATGTTTAAATACACTCACTTTTGAGGTATACCAATACTAATGATGAAG AAGAGGAGGAAAGAGAGAAA
Downstream 100 bases:
>100_bases CTGAGAAAAGCAGGCTGCACTAGCCTGCTTTTCTCAGTGATGTTAAATGGACGTTTCTTTACGGACAACAGTTGTCGTAT TCTTGTTTCGGGTCGCTGCA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MDLHNYLANGIPPQKQDKQPGDEAVMEPRPIYEDDDYKGTGKLRGKVALITGGDSGIGRAVAVGYAKEGAHIAIVYLDEH EDAEQTKQRVEQEGVQCITISGDISDETFCKESVERTVTELGCLDILVNNAAEQHPVNDLRELTAEQLHRTFATNFYSYV YYTKAALDYLKPGSAIINTSSINAYRGNVTLIDYTSTKGAITAFTRSMAQALASKHIRVNSVAPGPIWTPLIPASFDEQK VSEFGTTTPMGRAGQPSELVGAYVLLASNDSSYMTGQAIHINGGDYISS
Sequences:
>Translated_289_residues MDLHNYLANGIPPQKQDKQPGDEAVMEPRPIYEDDDYKGTGKLRGKVALITGGDSGIGRAVAVGYAKEGAHIAIVYLDEH EDAEQTKQRVEQEGVQCITISGDISDETFCKESVERTVTELGCLDILVNNAAEQHPVNDLRELTAEQLHRTFATNFYSYV YYTKAALDYLKPGSAIINTSSINAYRGNVTLIDYTSTKGAITAFTRSMAQALASKHIRVNSVAPGPIWTPLIPASFDEQK VSEFGTTTPMGRAGQPSELVGAYVLLASNDSSYMTGQAIHINGGDYISS >Mature_289_residues MDLHNYLANGIPPQKQDKQPGDEAVMEPRPIYEDDDYKGTGKLRGKVALITGGDSGIGRAVAVGYAKEGAHIAIVYLDEH EDAEQTKQRVEQEGVQCITISGDISDETFCKESVERTVTELGCLDILVNNAAEQHPVNDLRELTAEQLHRTFATNFYSYV YYTKAALDYLKPGSAIINTSSINAYRGNVTLIDYTSTKGAITAFTRSMAQALASKHIRVNSVAPGPIWTPLIPASFDEQK VSEFGTTTPMGRAGQPSELVGAYVLLASNDSSYMTGQAIHINGGDYISS
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=32.3008849557522, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI32483357, Length=258, Percent_Identity=30.6201550387597, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI10190704, Length=275, Percent_Identity=29.8181818181818, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=31.1475409836066, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI15277342, Length=256, Percent_Identity=29.6875, Blast_Score=98, Evalue=7e-21, Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=29.718875502008, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=29.6747967479675, Blast_Score=90, Evalue=3e-18, Organism=Homo sapiens, GI31542939, Length=211, Percent_Identity=30.3317535545024, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI4758504, Length=255, Percent_Identity=26.6666666666667, Blast_Score=85, Evalue=7e-17, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=27.34375, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=26.2548262548263, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI33667109, Length=212, Percent_Identity=31.1320754716981, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=30.1960784313725, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI224922801, Length=182, Percent_Identity=31.3186813186813, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=28.6486486486486, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=24.7058823529412, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI32455239, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI5031765, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1789378, Length=277, Percent_Identity=44.7653429602888, Blast_Score=241, Evalue=3e-65, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=32.6693227091633, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.520325203252, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=31.8725099601594, Blast_Score=121, Evalue=7e-29, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.2448979591837, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=28.9795918367347, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=29.5719844357977, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=29.4354838709677, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=31.4516129032258, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=29.0983606557377, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=25.78125, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787545, Length=263, Percent_Identity=26.615969581749, Blast_Score=72, Evalue=4e-14, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=34.1463414634146, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=34.7328244274809, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=33.2075471698113, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=33.0827067669173, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17531453, Length=262, Percent_Identity=33.969465648855, Blast_Score=107, Evalue=5e-24, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=34.2205323193916, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=30.8, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=30.9433962264151, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=32.6996197718631, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=32.1428571428571, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=32.6923076923077, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=29.3172690763052, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=30.7116104868914, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=31.4176245210728, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI17560332, Length=257, Percent_Identity=32.6848249027237, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=31.9391634980989, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=31.4606741573034, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=30.6818181818182, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=33.4600760456274, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17536025, Length=268, Percent_Identity=28.7313432835821, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=30.952380952381, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538486, Length=260, Percent_Identity=30.3846153846154, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=28.515625, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=30.6772908366534, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=277, Percent_Identity=24.5487364620939, Blast_Score=81, Evalue=8e-16, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=28.8617886178862, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17565030, Length=257, Percent_Identity=30.7392996108949, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17564282, Length=230, Percent_Identity=29.1304347826087, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=24.8, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71982365, Length=248, Percent_Identity=27.8225806451613, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI193203117, Length=193, Percent_Identity=27.979274611399, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17561272, Length=262, Percent_Identity=26.7175572519084, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=222, Percent_Identity=29.2792792792793, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=191, Percent_Identity=27.2251308900524, Blast_Score=63, Evalue=6e-11, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=32, Blast_Score=115, Evalue=4e-26, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=32.8, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI24644339, Length=254, Percent_Identity=33.0708661417323, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=31.2, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI23397609, Length=250, Percent_Identity=32.4, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=31.8897637795276, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.5789473684211, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=35.8565737051793, Blast_Score=92, Evalue=5e-19, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=25.8823529411765, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI281364892, Length=170, Percent_Identity=28.8235294117647, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=25.9433962264151, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31360; Mature: 31360
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLHNYLANGIPPQKQDKQPGDEAVMEPRPIYEDDDYKGTGKLRGKVALITGGDSGIGRA CCHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEECEEEEEEECCCCCCCCE VAVGYAKEGAHIAIVYLDEHEDAEQTKQRVEQEGVQCITISGDISDETFCKESVERTVTE EEEEEECCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH LGCLDILVNNAAEQHPVNDLRELTAEQLHRTFATNFYSYVYYTKAALDYLKPGSAIINTS HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC SINAYRGNVTLIDYTSTKGAITAFTRSMAQALASKHIRVNSVAPGPIWTPLIPASFDEQK CCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHH VSEFGTTTPMGRAGQPSELVGAYVLLASNDSSYMTGQAIHINGGDYISS HHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCEEECEEEEECCCCCCCC >Mature Secondary Structure MDLHNYLANGIPPQKQDKQPGDEAVMEPRPIYEDDDYKGTGKLRGKVALITGGDSGIGRA CCHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEECEEEEEEECCCCCCCCE VAVGYAKEGAHIAIVYLDEHEDAEQTKQRVEQEGVQCITISGDISDETFCKESVERTVTE EEEEEECCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH LGCLDILVNNAAEQHPVNDLRELTAEQLHRTFATNFYSYVYYTKAALDYLKPGSAIINTS HHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC SINAYRGNVTLIDYTSTKGAITAFTRSMAQALASKHIRVNSVAPGPIWTPLIPASFDEQK CCEEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHH VSEFGTTTPMGRAGQPSELVGAYVLLASNDSSYMTGQAIHINGGDYISS HHHCCCCCCCCCCCCCHHHEEEEEEEECCCCCEEECEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]