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The map label for this gene is soxS [C]

Identifier: 56963221

GI number: 56963221

Start: 1575989

End: 1576816

Strand: Direct

Name: soxS [C]

Synonym: ABC1456

Alternate gene names: 56963221

Gene position: 1575989-1576816 (Clockwise)

Preceding gene: 56963220

Following gene: 56963223

Centisome position: 36.62

GC content: 41.55

Gene sequence:

>828_bases
ATGAAAAAGATGTATGAACATATCGAAATCGATCGTAAAAAGCTGATTAACCTCTTTATTTTCCAGGCGAGGACGACAGA
AAGAGTTATTCCGATGCATTTTCACAGCAACATGGAACTGATTTACTGTATTAACGGAAGCTTGCGGGTCTGGCACGAAG
GAAAAGTTACCACTCTAATGGATAAGGATATGCTGTTCATAAACAGCAATGTCCCCCACTCCACTCAAAGTCTTACGGAG
AACCGCGTGCTAGTGCTGTATTTTCCGAAATCTTTTTTTGCCAGCGAACAAGTTCTTATTCAATTGAACACCTCGGAAGA
ACAGCTGGATGAGCAGGTGCTGTCCAATCTAAGAACGCTGCTTATGGAAATATACAACCTTCATTATTCAACGGGCACGT
ATGACTATATTCTGGCACAAAGCCGGATCATTGAGTTGAAATACTGGCTGGCGCGCCATTTTAGCCAAACAGCCGAGCTT
TCCCCTGCTACTAGCAGATCCGATCGACAAAAAATCCAAACGATTCTAGACTTTATTAAAGAGCATTATACCGAAAACAT
CAGTTTGGCCGAAACTGCCCGCATATGCGGTTATTCTGAGGCTTATTTGTCCAGGATGTTTCATGAATATACAGGGCAGA
CATTTACGGAGTACAAGCAGATCCTTTGTCTAGAGAAAGCAATTGATTTGCTCGATACTACGAACAAGTCGCTTACAGAG
ATCTCCTATGAAACCGGCTTCCCTAACGTGAAATCGTTTAGAAAAGTATTTAAGGAAGTCATGGGGAAAACCCCTTATGA
ATATAAAAAATCAACTGACATGTACTAG

Upstream 100 bases:

>100_bases
TGCATATTTTACTATCGGTATACTATAGGTAAAAGGGACTGGTTCTAGTTCCAAGGAAACAAGCAGGTTCATGTTCACGG
TTTGGTGACGGGGTGGCAAA

Downstream 100 bases:

>100_bases
TGCAGTGTTGAAGGTGTAGCAGAAAAGGATCAAACCTGTGGCTCTTCTAAATTTGATTGTTTTTCTTCAATAACGCATCT
GTTAGTTACTAATTAGCTAA

Product: AraC/XylS family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MKKMYEHIEIDRKKLINLFIFQARTTERVIPMHFHSNMELIYCINGSLRVWHEGKVTTLMDKDMLFINSNVPHSTQSLTE
NRVLVLYFPKSFFASEQVLIQLNTSEEQLDEQVLSNLRTLLMEIYNLHYSTGTYDYILAQSRIIELKYWLARHFSQTAEL
SPATSRSDRQKIQTILDFIKEHYTENISLAETARICGYSEAYLSRMFHEYTGQTFTEYKQILCLEKAIDLLDTTNKSLTE
ISYETGFPNVKSFRKVFKEVMGKTPYEYKKSTDMY

Sequences:

>Translated_275_residues
MKKMYEHIEIDRKKLINLFIFQARTTERVIPMHFHSNMELIYCINGSLRVWHEGKVTTLMDKDMLFINSNVPHSTQSLTE
NRVLVLYFPKSFFASEQVLIQLNTSEEQLDEQVLSNLRTLLMEIYNLHYSTGTYDYILAQSRIIELKYWLARHFSQTAEL
SPATSRSDRQKIQTILDFIKEHYTENISLAETARICGYSEAYLSRMFHEYTGQTFTEYKQILCLEKAIDLLDTTNKSLTE
ISYETGFPNVKSFRKVFKEVMGKTPYEYKKSTDMY
>Mature_275_residues
MKKMYEHIEIDRKKLINLFIFQARTTERVIPMHFHSNMELIYCINGSLRVWHEGKVTTLMDKDMLFINSNVPHSTQSLTE
NRVLVLYFPKSFFASEQVLIQLNTSEEQLDEQVLSNLRTLLMEIYNLHYSTGTYDYILAQSRIIELKYWLARHFSQTAEL
SPATSRSDRQKIQTILDFIKEHYTENISLAETARICGYSEAYLSRMFHEYTGQTFTEYKQILCLEKAIDLLDTTNKSLTE
ISYETGFPNVKSFRKVFKEVMGKTPYEYKKSTDMY

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32487; Mature: 32487

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMYEHIEIDRKKLINLFIFQARTTERVIPMHFHSNMELIYCINGSLRVWHEGKVTTLM
CCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEECCCEEEEECCCEEEEE
DKDMLFINSNVPHSTQSLTENRVLVLYFPKSFFASEQVLIQLNTSEEQLDEQVLSNLRTL
CCCEEEEECCCCCCHHHHCCCCEEEEEECHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH
LMEIYNLHYSTGTYDYILAQSRIIELKYWLARHFSQTAELSPATSRSDRQKIQTILDFIK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EHYTENISLAETARICGYSEAYLSRMFHEYTGQTFTEYKQILCLEKAIDLLDTTNKSLTE
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
ISYETGFPNVKSFRKVFKEVMGKTPYEYKKSTDMY
EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKMYEHIEIDRKKLINLFIFQARTTERVIPMHFHSNMELIYCINGSLRVWHEGKVTTLM
CCHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEECCCEEEEECCCEEEEE
DKDMLFINSNVPHSTQSLTENRVLVLYFPKSFFASEQVLIQLNTSEEQLDEQVLSNLRTL
CCCEEEEECCCCCCHHHHCCCCEEEEEECHHHCCCCEEEEEECCCHHHHHHHHHHHHHHH
LMEIYNLHYSTGTYDYILAQSRIIELKYWLARHFSQTAELSPATSRSDRQKIQTILDFIK
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EHYTENISLAETARICGYSEAYLSRMFHEYTGQTFTEYKQILCLEKAIDLLDTTNKSLTE
HHHCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
ISYETGFPNVKSFRKVFKEVMGKTPYEYKKSTDMY
EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]