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The map label for this gene is rnhA [H]

Identifier: 56963050

GI number: 56963050

Start: 1399495

End: 1400094

Strand: Direct

Name: rnhA [H]

Synonym: ABC1278

Alternate gene names: 56963050

Gene position: 1399495-1400094 (Clockwise)

Preceding gene: 56963047

Following gene: 56963051

Centisome position: 32.52

GC content: 45.83

Gene sequence:

>600_bases
ATGGCAAAGCAAAAATATTACGTTGTTTGGAAAGGAAGAAAACAAGGGATTTTCCGGTCATGGGCTGACTGTGAAGCCCA
AGTGAAAGGGTACCCTCAGGCAAGGTTTAAATCATTCCCTACGCTTGCAGAAGCAGAGGCTGCTTTCCAAGGCAAAAGCA
TGGCCTCTTCAGTGAGGCCAAAAGACAAAGCGCAAAAATCACCTGTTTGGGACAGCGTTAGCGTTGACGTTGGTAGCCAA
GGGAATCCTGGAAAAGTTGAATACAAAGGGGTTGACACCAAGACAGGGGAGATTTTATTTGAAAAGACGCCCATTAACAT
GGGCACGAATAATATGGGCGAGTTTTTAGCGATTGTCCATGGCCTCGCCTATGTACAAGGAACGGACAAGCCTGTCTACT
CTGATTCTGCGACTGCAATTGGTTGGGTAAAAAAGAAAAAAGCCAATTCTACATTAAGCCGGACAAAAGAAACGGAAGAA
ATTTGGTCGCTTGTGGAACGGGCGGAGAAATGGCTGCGCGAAAACCCTAACCATAATCCAGTGTTAAAATGGGAAACGGA
TGTGTGGGGAGAGATAAAAGCCGATTATGGCCGAAAGTGA

Upstream 100 bases:

>100_bases
AAGGTTTTTTTTGCTTGTTTATTTCGTTTCAAGTTGCCTCACCTCCATCCATACGTTTTCCATGGCAGTCCGAAACTATA
CGATCCAAGGAGGTTAAAAA

Downstream 100 bases:

>100_bases
TCGTCGTTAAAAAGGGGAATTTAAGGGTATAGATATAAAAAATCGGTTTATTTTGAAAAGGAGTGCTTGAGCTGTTATGT
ACGAGACATTGCTAGCCGTT

Product: ribonuclease

Products: NA

Alternate protein names: RNase H [H]

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAKQKYYVVWKGRKQGIFRSWADCEAQVKGYPQARFKSFPTLAEAEAAFQGKSMASSVRPKDKAQKSPVWDSVSVDVGSQ
GNPGKVEYKGVDTKTGEILFEKTPINMGTNNMGEFLAIVHGLAYVQGTDKPVYSDSATAIGWVKKKKANSTLSRTKETEE
IWSLVERAEKWLRENPNHNPVLKWETDVWGEIKADYGRK

Sequences:

>Translated_199_residues
MAKQKYYVVWKGRKQGIFRSWADCEAQVKGYPQARFKSFPTLAEAEAAFQGKSMASSVRPKDKAQKSPVWDSVSVDVGSQ
GNPGKVEYKGVDTKTGEILFEKTPINMGTNNMGEFLAIVHGLAYVQGTDKPVYSDSATAIGWVKKKKANSTLSRTKETEE
IWSLVERAEKWLRENPNHNPVLKWETDVWGEIKADYGRK
>Mature_198_residues
AKQKYYVVWKGRKQGIFRSWADCEAQVKGYPQARFKSFPTLAEAEAAFQGKSMASSVRPKDKAQKSPVWDSVSVDVGSQG
NPGKVEYKGVDTKTGEILFEKTPINMGTNNMGEFLAIVHGLAYVQGTDKPVYSDSATAIGWVKKKKANSTLSRTKETEEI
WSLVERAEKWLRENPNHNPVLKWETDVWGEIKADYGRK

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG3341

COG function: function code R; Predicted double-stranded RNA/RNA-DNA hybrid binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009027
- InterPro:   IPR017290
- InterPro:   IPR011320
- InterPro:   IPR012337
- InterPro:   IPR002156 [H]

Pfam domain/function: PF01693 Cauli_VI; PF00075 RnaseH [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22381; Mature: 22249

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKYYVVWKGRKQGIFRSWADCEAQVKGYPQARFKSFPTLAEAEAAFQGKSMASSVRP
CCCCEEEEEEECCCCCCHHHHHCCHHHHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHCCC
KDKAQKSPVWDSVSVDVGSQGNPGKVEYKGVDTKTGEILFEKTPINMGTNNMGEFLAIVH
CHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHH
GLAYVQGTDKPVYSDSATAIGWVKKKKANSTLSRTKETEEIWSLVERAEKWLRENPNHNP
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VLKWETDVWGEIKADYGRK
EEEECCCCCCEECCCCCCC
>Mature Secondary Structure 
AKQKYYVVWKGRKQGIFRSWADCEAQVKGYPQARFKSFPTLAEAEAAFQGKSMASSVRP
CCCEEEEEEECCCCCCHHHHHCCHHHHCCCCHHHHHCCCCHHHHHHHHCCHHHHHHCCC
KDKAQKSPVWDSVSVDVGSQGNPGKVEYKGVDTKTGEILFEKTPINMGTNNMGEFLAIVH
CHHHHCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHH
GLAYVQGTDKPVYSDSATAIGWVKKKKANSTLSRTKETEEIWSLVERAEKWLRENPNHNP
HHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VLKWETDVWGEIKADYGRK
EEEECCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]