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The map label for this gene is abrB [H]

Identifier: 56963047

GI number: 56963047

Start: 1398386

End: 1398682

Strand: Direct

Name: abrB [H]

Synonym: ABC1275

Alternate gene names: 56963047

Gene position: 1398386-1398682 (Clockwise)

Preceding gene: 56963046

Following gene: 56963050

Centisome position: 32.49

GC content: 45.79

Gene sequence:

>297_bases
ATGAAAGCGACGGGCATTGTCCGTAAAGTGGACCAGCTAGGGCGAATTGTCGTGCCAAAAGAATTGCGGAAAACCATGGG
AATTGATATTGGCAGCCCATTGGAAATCTATGTAGAAGATGACCGTGTGATTGTCAGGAAGTACGAGCCTTCCATCAAAA
CATGCATGGTAACAGGTGAATCTTCAGAAGAACATTTGGAACTGGCAAACGGAAACGTTGTGCTGAGCCAGGAAGCGGCC
AAACAGTTATTGGACGAATTAAAGCAAAAAGAGAGCCGTTTTGTCGGGAACGCTTAA

Upstream 100 bases:

>100_bases
AAGCACCGATTCGAGTAAATTAGTGGAGCGGTTATGGAACGAAGCGCCCTGACATGGTTTAATAGGAATGTGAATCGTTT
GAATATAAGGAGGATGCTGA

Downstream 100 bases:

>100_bases
ACGGACAGCTTAGACAGGTAGAAGCCGTTTGTCAGACGGTGAAACGAGTGAGAGCGATTAGCACATAGGCTCATAGGCAA
TGGTATTCTCCGTTGGAATA

Product: transition state regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGESSEEHLELANGNVVLSQEAA
KQLLDELKQKESRFVGNA

Sequences:

>Translated_98_residues
MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGESSEEHLELANGNVVLSQEAA
KQLLDELKQKESRFVGNA
>Mature_98_residues
MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGESSEEHLELANGNVVLSQEAA
KQLLDELKQKESRFVGNA

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10941; Mature: 10941

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGE
CCCCHHHHHHHHCCCEECCHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEEECC
SSEEHLELANGNVVLSQEAAKQLLDELKQKESRFVGNA
CCCHHEEECCCCEEECHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKATGIVRKVDQLGRIVVPKELRKTMGIDIGSPLEIYVEDDRVIVRKYEPSIKTCMVTGE
CCCCHHHHHHHHCCCEECCHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCEEEEEECC
SSEEHLELANGNVVLSQEAAKQLLDELKQKESRFVGNA
CCCHHEEECCCCEEECHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]