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The map label for this gene is rarA [H]

Identifier: 55981853

GI number: 55981853

Start: 1767832

End: 1769097

Strand: Direct

Name: rarA [H]

Synonym: TTHA1884

Alternate gene names: 55981853

Gene position: 1767832-1769097 (Clockwise)

Preceding gene: 55981851

Following gene: 55981856

Centisome position: 95.57

GC content: 71.88

Gene sequence:

>1266_bases
ATGAGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCCCAGGGGCTTCTGAGGCGGATGCTGGAGGCGGGGCGGCTTTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCAGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCGGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTTAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Upstream 100 bases:

>100_bases
GGTCCGCCACGGCCAGGGGGAGGAGGCCAAGGAGGAAGAACCCCCACGGCAAGAGGAAGAGCGCCCGCATTCTCCCCAAG
CCTACCACAGGCCCTTTACC

Downstream 100 bases:

>100_bases
AGAGGACCCCGCTCATCCCCGGCGCGCCCAAGGCCCCCACCTCCGCCACCCAGCCCCCGCCGTAGACCCCCGCGGAAAGC
TGGTAGGCCAACCCCCACTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Sequences:

>Translated_421_residues
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG
>Mature_421_residues
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=40.7239819004525, Blast_Score=303, Evalue=3e-82,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=37.3303167420815, Blast_Score=251, Evalue=9e-67,
Organism=Homo sapiens, GI31563534, Length=326, Percent_Identity=26.3803680981595, Blast_Score=77, Evalue=2e-14,
Organism=Escherichia coli, GI1787119, Length=432, Percent_Identity=45.6018518518519, Blast_Score=355, Evalue=4e-99,
Organism=Caenorhabditis elegans, GI71986063, Length=236, Percent_Identity=29.6610169491525, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=40.9411764705882, Blast_Score=290, Evalue=3e-79,
Organism=Saccharomyces cerevisiae, GI6324039, Length=269, Percent_Identity=28.6245353159851, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI18859927, Length=214, Percent_Identity=27.1028037383178, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 46180; Mature: 46180

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARL
CCCHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
LAEGVGRPFLRLSAVEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
LLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLALLRRALEDPRGLPGTPYEEEA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHH
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEAL
HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GSPEGELALVEAAVYLALAPKSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALG
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
HGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEERVRERLKALRERFQTARRRR
CCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MREVEPLAERLRPRSLDEVLGQPHLTGPQGLLRRMLEAGRLSSMVLFGPPGTGKTTLARL
CCCHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
LAEGVGRPFLRLSAVEAGLKEVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCC
LLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLALLRRALEDPRGLPGTPYEEEA
HHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
LRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHH
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEAL
HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
GSPEGELALVEAAVYLALAPKSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALG
CCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
HGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEERVRERLKALRERFQTARRRR
CCCCEEEEECCCCCCHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]