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The map label for this gene is yfdE [H]

Identifier: 55981856

GI number: 55981856

Start: 1770459

End: 1771682

Strand: Direct

Name: yfdE [H]

Synonym: TTHA1887

Alternate gene names: 55981856

Gene position: 1770459-1771682 (Clockwise)

Preceding gene: 55981853

Following gene: 55981857

Centisome position: 95.71

GC content: 70.83

Gene sequence:

>1224_bases
ATGAAGCCCCTTTCCGGCCTCAAGGTCCTGGACCTCTCCCGGGTCCTGGCGGGGCCCCTCTGCACCATGATCCTGGCGGA
CCTCGGGGCGGAGGTGGTCAAGGTGGAGCCTCCCTGGGGGGACGAGACCCGGGGCTGGGGCCCGCCCTTCGTGGAGGGGG
AGAGCGCTTACTTCCTCGCGGTGAACCGGGGAAAGCGGAGCGTGGCCTTAGACCTCAAGCGCCCAGAGGGCCAGGAGGCG
GTGCGCCGCCTCGCCCAGAAGGCGGACGTCCTGGTGGAGAACTTCAAGACGGGGGACCTCAGGCGCTTCGGCCTGGACTA
CGAGAGCCTAAAGCCCTTGAACCCCCGCCTCATTTACCTCTCCATCACGGGCTTCGGCCACACCGGGCCCAGGGCCAAGG
AGCCCGGCTACGACGCCGCCCTCCAGGGCTACACCGGGATCATGTCCGTCACGGGCGAGCCCGAAGGCCCCCCCATGAAG
GTGGGGGTGGCCTGGATTGACGTGATGACGGGGATGATGGGGGCCTTGGCCGTGCTCGCCGCCCTCTGGGAGCGGGAGCG
AAGCGGCCTCGGCCAGCACATAGACCTCTCCCTCTTTGACGTGGGGCTTTTCGCCCTGGCGAACCTGGGGGAAAGCTTCC
TCCTCACGGGAAAGCCCCCAAAAAGGCTCGGCAACGCCCACGCCCAGATCGTCCCCTACGGGGCCTTCCCCGCGGAGGAC
GGCTGGCTCGTCCTGGCGGTGGGCAACGACGAGCAGTTTGCGAGGCTCTGCCAGGTGGTGGGGCTTCCCGACCTCGCCCG
GCGCTTTCCCACGAACGCCCTCCGGGTGGAGCACCGGGAGGAGGTGGTGGAGGCCCTTTCCCGGGCCCTTAAGGCCCGCT
CCCGGGCCCACTGGCTGGAAAGGTTCAAGGAGGCGGGCGTCCCCGCCGCCCCCGTGAACGACCTGAAGGAGGCCTTCCAG
GACCCCCAGGCGAGGGCGCGGGGCGCGGTCTGGACCCTCCCCCATCCCCTCCTGGGCGCCCTCCCCACCCTGGCCAACCC
CTTGCGCTTCCTCTCCCGGACCCCCGCGGGGCCAGGCCTTCCCCCGCCCCTCCTTGGGGAGCACACGCGGGAGGTCCTCC
TCGAGGCGGGCTACACCCCGGAGGCGGTGGCGGACCTGGTCCAAAGGGGGATCGCCAAGGAAGCGCCCCCGGCTTCCCAG
CGGCGCCCGGACCGAGGCGCTTAG

Upstream 100 bases:

>100_bases
ATCCAGAGGAAGGGGAGGAGGACGGCAAGGAGCACCGCAAGCGCCAAGGCGTGCCGGAGGAAGCGGCCCACCCCCCCACT
ATACCGCGTAAGATGCCCCT

Downstream 100 bases:

>100_bases
GGCTGCTTCCTTCCGGACCTGACCCGGTTCACGCCTGGCCCGCCGCGCTGGACCGGGGGCTCGGGTAGTATAGCACCCAT
GGAAGCCCTGAGGCTAGAGG

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKPLSGLKVLDLSRVLAGPLCTMILADLGAEVVKVEPPWGDETRGWGPPFVEGESAYFLAVNRGKRSVALDLKRPEGQEA
VRRLAQKADVLVENFKTGDLRRFGLDYESLKPLNPRLIYLSITGFGHTGPRAKEPGYDAALQGYTGIMSVTGEPEGPPMK
VGVAWIDVMTGMMGALAVLAALWERERSGLGQHIDLSLFDVGLFALANLGESFLLTGKPPKRLGNAHAQIVPYGAFPAED
GWLVLAVGNDEQFARLCQVVGLPDLARRFPTNALRVEHREEVVEALSRALKARSRAHWLERFKEAGVPAAPVNDLKEAFQ
DPQARARGAVWTLPHPLLGALPTLANPLRFLSRTPAGPGLPPPLLGEHTREVLLEAGYTPEAVADLVQRGIAKEAPPASQ
RRPDRGA

Sequences:

>Translated_407_residues
MKPLSGLKVLDLSRVLAGPLCTMILADLGAEVVKVEPPWGDETRGWGPPFVEGESAYFLAVNRGKRSVALDLKRPEGQEA
VRRLAQKADVLVENFKTGDLRRFGLDYESLKPLNPRLIYLSITGFGHTGPRAKEPGYDAALQGYTGIMSVTGEPEGPPMK
VGVAWIDVMTGMMGALAVLAALWERERSGLGQHIDLSLFDVGLFALANLGESFLLTGKPPKRLGNAHAQIVPYGAFPAED
GWLVLAVGNDEQFARLCQVVGLPDLARRFPTNALRVEHREEVVEALSRALKARSRAHWLERFKEAGVPAAPVNDLKEAFQ
DPQARARGAVWTLPHPLLGALPTLANPLRFLSRTPAGPGLPPPLLGEHTREVLLEAGYTPEAVADLVQRGIAKEAPPASQ
RRPDRGA
>Mature_407_residues
MKPLSGLKVLDLSRVLAGPLCTMILADLGAEVVKVEPPWGDETRGWGPPFVEGESAYFLAVNRGKRSVALDLKRPEGQEA
VRRLAQKADVLVENFKTGDLRRFGLDYESLKPLNPRLIYLSITGFGHTGPRAKEPGYDAALQGYTGIMSVTGEPEGPPMK
VGVAWIDVMTGMMGALAVLAALWERERSGLGQHIDLSLFDVGLFALANLGESFLLTGKPPKRLGNAHAQIVPYGAFPAED
GWLVLAVGNDEQFARLCQVVGLPDLARRFPTNALRVEHREEVVEALSRALKARSRAHWLERFKEAGVPAAPVNDLKEAFQ
DPQARARGAVWTLPHPLLGALPTLANPLRFLSRTPAGPGLPPPLLGEHTREVLLEAGYTPEAVADLVQRGIAKEAPPASQ
RRPDRGA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=398, Percent_Identity=41.7085427135678, Blast_Score=338, Evalue=4e-93,
Organism=Homo sapiens, GI300863124, Length=424, Percent_Identity=39.622641509434, Blast_Score=325, Evalue=4e-89,
Organism=Homo sapiens, GI300863126, Length=398, Percent_Identity=38.1909547738693, Blast_Score=288, Evalue=6e-78,
Organism=Homo sapiens, GI13376042, Length=424, Percent_Identity=36.3207547169811, Blast_Score=280, Evalue=2e-75,
Organism=Homo sapiens, GI266456254, Length=401, Percent_Identity=30.4239401496259, Blast_Score=154, Evalue=2e-37,
Organism=Homo sapiens, GI42794625, Length=387, Percent_Identity=31.0077519379845, Blast_Score=153, Evalue=2e-37,
Organism=Homo sapiens, GI266458393, Length=198, Percent_Identity=36.3636363636364, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI266458397, Length=198, Percent_Identity=36.3636363636364, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=38.4615384615385, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=38.4615384615385, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI87082093, Length=329, Percent_Identity=41.3373860182371, Blast_Score=279, Evalue=2e-76,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=31.7307692307692, Blast_Score=184, Evalue=7e-48,
Organism=Escherichia coli, GI1786222, Length=410, Percent_Identity=26.3414634146341, Blast_Score=102, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI32564160, Length=334, Percent_Identity=26.6467065868263, Blast_Score=93, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=328, Percent_Identity=27.4390243902439, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=45.3400503778337, Blast_Score=339, Evalue=2e-93,
Organism=Drosophila melanogaster, GI24585488, Length=395, Percent_Identity=29.1139240506329, Blast_Score=134, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44095; Mature: 44095

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLSGLKVLDLSRVLAGPLCTMILADLGAEVVKVEPPWGDETRGWGPPFVEGESAYFLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEE
VNRGKRSVALDLKRPEGQEAVRRLAQKADVLVENFKTGDLRRFGLDYESLKPLNPRLIYL
EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCCCCEEEEE
SITGFGHTGPRAKEPGYDAALQGYTGIMSVTGEPEGPPMKVGVAWIDVMTGMMGALAVLA
EEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ALWERERSGLGQHIDLSLFDVGLFALANLGESFLLTGKPPKRLGNAHAQIVPYGAFPAED
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCEEEEECCCCCCCC
GWLVLAVGNDEQFARLCQVVGLPDLARRFPTNALRVEHREEVVEALSRALKARSRAHWLE
CEEEEEECCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFKEAGVPAAPVNDLKEAFQDPQARARGAVWTLPHPLLGALPTLANPLRFLSRTPAGPGL
HHHHCCCCCCCHHHHHHHHHCHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC
PPPLLGEHTREVLLEAGYTPEAVADLVQRGIAKEAPPASQRRPDRGA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPLSGLKVLDLSRVLAGPLCTMILADLGAEVVKVEPPWGDETRGWGPPFVEGESAYFLA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEE
VNRGKRSVALDLKRPEGQEAVRRLAQKADVLVENFKTGDLRRFGLDYESLKPLNPRLIYL
EECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHCCCCCCEEEEE
SITGFGHTGPRAKEPGYDAALQGYTGIMSVTGEPEGPPMKVGVAWIDVMTGMMGALAVLA
EEECCCCCCCCCCCCCCHHHHCCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHH
ALWERERSGLGQHIDLSLFDVGLFALANLGESFLLTGKPPKRLGNAHAQIVPYGAFPAED
HHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHCCCCEEEEECCCCCCCC
GWLVLAVGNDEQFARLCQVVGLPDLARRFPTNALRVEHREEVVEALSRALKARSRAHWLE
CEEEEEECCCHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFKEAGVPAAPVNDLKEAFQDPQARARGAVWTLPHPLLGALPTLANPLRFLSRTPAGPGL
HHHHCCCCCCCHHHHHHHHHCHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCC
PPPLLGEHTREVLLEAGYTPEAVADLVQRGIAKEAPPASQRRPDRGA
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]