| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is 55981817
Identifier: 55981817
GI number: 55981817
Start: 1732434
End: 1733711
Strand: Direct
Name: 55981817
Synonym: TTHA1848
Alternate gene names: NA
Gene position: 1732434-1733711 (Clockwise)
Preceding gene: 55981816
Following gene: 55981818
Centisome position: 93.66
GC content: 63.54
Gene sequence:
>1278_bases ATGCGCAAGACCTGGGTTCTGTTGCTTCTCGGCCTCGGCCTTCTCCTCGCCGCCTGCGGCGGGCAGACGGGCGGTGGGGG CGGTGGGGGCGGCGACGGCGGGAGCGGTGGGGGCGGCGACGGTGGGGGCGGCGGCAACACCGTAACCGTGTCCGCCCCGG GCATGCGCGCCGCCCTCTACCGTGTGGGCGGTGGGACGTGGCAGGCCCCCGCGGACCCAACGAACTTCTCGTTCACCGCC ACCGGTGCCTACGAGGTCGCGCTCGTGTGCAACGAATTCGGGCAAATCCGGCTGCAACTCTTCGGCGCCACGGTCTCCGA ACTGAACCGAGTGGTCAGCGGCTGCGGCGGCACCGAGCCCGACCAGATCAGCTTTAGCCTGAGCGTGGACCCGGGCCCCT TCCCCAGCGATAACGCCTTTGCCATGATCTGGGGCAAGGGGTTCCAGGGTAACTGCTATCCGATTCTTGGATGGCCGTGC ACGATGAACGCCGATGCCCCTGCGGAGACGGCCGGGACACAGGATGTCGTCGCGTTCCTTGTGGACATGGATCTGAACCT GATCGCGGCCCGCAAGGAAACGCTTAGCATCGCCAACGGAGGGAACTACACGATTACCTTTGCGGCAGGGGACGACAGCT TCACTACAGCCACGCTCCCTGACTTTACGGCCCCTGCGGGCATGGCCAAGTACTGGATTGTGAGCGGAGCCACGAGCGGC GGAACCGTCTTTCTGGCCTCCAAGCTGCGTGAGGTTGCGTACTACCAACTTCCTTTCGCCTCGGTCTACGCCTTCCAGGC CTTTGCGGTCCAGGAGTCCTCCGAGCCTTACGACGAACTTGTGTACCAAGAAACCCGCGCCGCCAGCGACGGCCCGCCCC CAAGCGTTAACCTTCCCAGTGTTCTAGACGTCACCGTGGATGGCAATCCACCCCAAGTTGGAAACCTCAGCCTAGCCGCG GACACGCTACTCTTCGGCCTGAACCTGGATTGGAGCGTTGACAGCACGCAATATACGATTCAGGCCGTGCTCTCCCGTGG CTTCCTTGGTAGCGCGACGACCTACACCGTCCCAGATCTCACGAGCCACACGCACTTTGAAAGCACCCTGCCGCCCTCCG GAACCGAAGTCACGGCTAGGGTCTACCATTTAATGGCGAACCGGACCCTCTCCGAGCTCCTTGAGGGGCAGACGGAACCT GGCCTTTTCCCGATCGGTACGCCCGGAGTTGTCTTGAAGTCTGCTAGTCGGTACGACATGACCTACACGGCTCCTTAA
Upstream 100 bases:
>100_bases TTCCCCGCGGGCTTACTTAACCGACCCTTAACCGGGCCTGTGCTATAGGTGGGGTGAGGTCCAAAAGCCAAGGGCCTCGA GCAGAGGGAGGTGATGGCGT
Downstream 100 bases:
>100_bases ACGCTGCTAGACACCCCGCCTCCGGGCCTGGGGGGTCTAGGAAAACGCTCCAGGCCCGGAGCATTCCCCCAGACCCCACG GATGCGTAGGCTTCTCCTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 425; Mature: 425
Protein sequence:
>425_residues MRKTWVLLLLGLGLLLAACGGQTGGGGGGGGDGGSGGGGDGGGGGNTVTVSAPGMRAALYRVGGGTWQAPADPTNFSFTA TGAYEVALVCNEFGQIRLQLFGATVSELNRVVSGCGGTEPDQISFSLSVDPGPFPSDNAFAMIWGKGFQGNCYPILGWPC TMNADAPAETAGTQDVVAFLVDMDLNLIAARKETLSIANGGNYTITFAAGDDSFTTATLPDFTAPAGMAKYWIVSGATSG GTVFLASKLREVAYYQLPFASVYAFQAFAVQESSEPYDELVYQETRAASDGPPPSVNLPSVLDVTVDGNPPQVGNLSLAA DTLLFGLNLDWSVDSTQYTIQAVLSRGFLGSATTYTVPDLTSHTHFESTLPPSGTEVTARVYHLMANRTLSELLEGQTEP GLFPIGTPGVVLKSASRYDMTYTAP
Sequences:
>Translated_425_residues MRKTWVLLLLGLGLLLAACGGQTGGGGGGGGDGGSGGGGDGGGGGNTVTVSAPGMRAALYRVGGGTWQAPADPTNFSFTA TGAYEVALVCNEFGQIRLQLFGATVSELNRVVSGCGGTEPDQISFSLSVDPGPFPSDNAFAMIWGKGFQGNCYPILGWPC TMNADAPAETAGTQDVVAFLVDMDLNLIAARKETLSIANGGNYTITFAAGDDSFTTATLPDFTAPAGMAKYWIVSGATSG GTVFLASKLREVAYYQLPFASVYAFQAFAVQESSEPYDELVYQETRAASDGPPPSVNLPSVLDVTVDGNPPQVGNLSLAA DTLLFGLNLDWSVDSTQYTIQAVLSRGFLGSATTYTVPDLTSHTHFESTLPPSGTEVTARVYHLMANRTLSELLEGQTEP GLFPIGTPGVVLKSASRYDMTYTAP >Mature_425_residues MRKTWVLLLLGLGLLLAACGGQTGGGGGGGGDGGSGGGGDGGGGGNTVTVSAPGMRAALYRVGGGTWQAPADPTNFSFTA TGAYEVALVCNEFGQIRLQLFGATVSELNRVVSGCGGTEPDQISFSLSVDPGPFPSDNAFAMIWGKGFQGNCYPILGWPC TMNADAPAETAGTQDVVAFLVDMDLNLIAARKETLSIANGGNYTITFAAGDDSFTTATLPDFTAPAGMAKYWIVSGATSG GTVFLASKLREVAYYQLPFASVYAFQAFAVQESSEPYDELVYQETRAASDGPPPSVNLPSVLDVTVDGNPPQVGNLSLAA DTLLFGLNLDWSVDSTQYTIQAVLSRGFLGSATTYTVPDLTSHTHFESTLPPSGTEVTARVYHLMANRTLSELLEGQTEP GLFPIGTPGVVLKSASRYDMTYTAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44081; Mature: 44081
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKTWVLLLLGLGLLLAACGGQTGGGGGGGGDGGSGGGGDGGGGGNTVTVSAPGMRAALY CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE RVGGGTWQAPADPTNFSFTATGAYEVALVCNEFGQIRLQLFGATVSELNRVVSGCGGTEP EECCCCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHCCCCCC DQISFSLSVDPGPFPSDNAFAMIWGKGFQGNCYPILGWPCTMNADAPAETAGTQDVVAFL CEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHH VDMDLNLIAARKETLSIANGGNYTITFAAGDDSFTTATLPDFTAPAGMAKYWIVSGATSG HHCCCEEEEECCCEEEEECCCCEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCC GTVFLASKLREVAYYQLPFASVYAFQAFAVQESSEPYDELVYQETRAASDGPPPSVNLPS CEEEEHHHHHHHHEEECCHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC VLDVTVDGNPPQVGNLSLAADTLLFGLNLDWSVDSTQYTIQAVLSRGFLGSATTYTVPDL EEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCC TSHTHFESTLPPSGTEVTARVYHLMANRTLSELLEGQTEPGLFPIGTPGVVLKSASRYDM CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCE TYTAP EEECC >Mature Secondary Structure MRKTWVLLLLGLGLLLAACGGQTGGGGGGGGDGGSGGGGDGGGGGNTVTVSAPGMRAALY CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEE RVGGGTWQAPADPTNFSFTATGAYEVALVCNEFGQIRLQLFGATVSELNRVVSGCGGTEP EECCCCCCCCCCCCCEEEEECCCEEEEEEECCCCEEEEEEECCCHHHHHHHHHHCCCCCC DQISFSLSVDPGPFPSDNAFAMIWGKGFQGNCYPILGWPCTMNADAPAETAGTQDVVAFL CEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHHH VDMDLNLIAARKETLSIANGGNYTITFAAGDDSFTTATLPDFTAPAGMAKYWIVSGATSG HHCCCEEEEECCCEEEEECCCCEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCC GTVFLASKLREVAYYQLPFASVYAFQAFAVQESSEPYDELVYQETRAASDGPPPSVNLPS CEEEEHHHHHHHHEEECCHHHHHHEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC VLDVTVDGNPPQVGNLSLAADTLLFGLNLDWSVDSTQYTIQAVLSRGFLGSATTYTVPDL EEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCC TSHTHFESTLPPSGTEVTARVYHLMANRTLSELLEGQTEPGLFPIGTPGVVLKSASRYDM CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEECCCCCCE TYTAP EEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA