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The map label for this gene is ydhC [H]

Identifier: 55981549

GI number: 55981549

Start: 1503315

End: 1503977

Strand: Reverse

Name: ydhC [H]

Synonym: TTHA1580

Alternate gene names: 55981549

Gene position: 1503977-1503315 (Counterclockwise)

Preceding gene: 55981550

Following gene: 55981548

Centisome position: 81.31

GC content: 72.4

Gene sequence:

>663_bases
ATGCAGACCCTGGGCTTCCGCCGCCCCAACCAGGTGCGCGAGGCGGTCTACCGCCACCTCAAGGACCTCCTCCTCTCGGG
GCGTTTCTCCCCGGGGGAGAGGCTTTCCGAGCCCCTTTTGGCCCAGGAGCTCGGCGTCTCCCGCACCCCCGTGCGGGAGG
CCCTGATGCGCCTCGCCGAGGAGGGCTTGGTGGAGCTCGTCCCGGGGAAGGGGGCGAGGGTCCGGGTCTTTGCCCCCGAG
GAGGTGGAGGAGGTCTACGGGGTGCGGGCCCTTTTGGAGGGGGAGGCGGCGCGGGAGGCGGCCTTGAGGGCCACCCCCTG
GGAGCTCGCCGAGCTTGAGCGCCTCCTTCAGGCCATAGACGAGGCCCCGCGGGAGGACTACCCGGAGCAGATGCGCCGCG
ACCTGGAGTTCCACCGCGCCTTGGTGCGGCTATCCGGGAACCGCACCCTTTACCGCCTCTACGAGGACCTCCTCGCCACC
CTGGCCCTGGCCCGGAGCGCCCTTCCCACCCTCTCCCAGGACGAGGCCACGAGGCGGGAGCACCGGGCGATCCTCGAGGC
CCTCCTCCGCAGGGACCCGGAGGAGGCGAGGCGGGCGGTGGAGGCCCACGTCTTCCGCTTCCGCGACCTGGTGGTGGGGC
GGCTTCGGGAGGAGGGAGGATGA

Upstream 100 bases:

>100_bases
GCGTGTGGAAGCGGCTTGGCGGGGGGCTGAAGCGCCTCCTGACCGGGCGCTAGCCGGGAGGCTTGCGGGGCGTGGACCCT
TGCTTTATCCTGTATACAGG

Downstream 100 bases:

>100_bases
ACCTGGACCTGGCTTACCGTTCCTTCGTGCTCGGCGTGGCGGGCCACCCTCAGGTGGAGCGCCTCATCAAGCACCGGGCG
AAGGGCCTGGTGCGGCGCTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MQTLGFRRPNQVREAVYRHLKDLLLSGRFSPGERLSEPLLAQELGVSRTPVREALMRLAEEGLVELVPGKGARVRVFAPE
EVEEVYGVRALLEGEAAREAALRATPWELAELERLLQAIDEAPREDYPEQMRRDLEFHRALVRLSGNRTLYRLYEDLLAT
LALARSALPTLSQDEATRREHRAILEALLRRDPEEARRAVEAHVFRFRDLVVGRLREEGG

Sequences:

>Translated_220_residues
MQTLGFRRPNQVREAVYRHLKDLLLSGRFSPGERLSEPLLAQELGVSRTPVREALMRLAEEGLVELVPGKGARVRVFAPE
EVEEVYGVRALLEGEAAREAALRATPWELAELERLLQAIDEAPREDYPEQMRRDLEFHRALVRLSGNRTLYRLYEDLLAT
LALARSALPTLSQDEATRREHRAILEALLRRDPEEARRAVEAHVFRFRDLVVGRLREEGG
>Mature_220_residues
MQTLGFRRPNQVREAVYRHLKDLLLSGRFSPGERLSEPLLAQELGVSRTPVREALMRLAEEGLVELVPGKGARVRVFAPE
EVEEVYGVRALLEGEAAREAALRATPWELAELERLLQAIDEAPREDYPEQMRRDLEFHRALVRLSGNRTLYRLYEDLLAT
LALARSALPTLSQDEATRREHRAILEALLRRDPEEARRAVEAHVFRFRDLVVGRLREEGG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=203, Percent_Identity=31.0344827586207, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1789621, Length=219, Percent_Identity=30.1369863013699, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1789353, Length=225, Percent_Identity=29.7777777777778, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082149, Length=200, Percent_Identity=29.5, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI87081914, Length=112, Percent_Identity=36.6071428571429, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25194; Mature: 25194

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTLGFRRPNQVREAVYRHLKDLLLSGRFSPGERLSEPLLAQELGVSRTPVREALMRLAE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLVELVPGKGARVRVFAPEEVEEVYGVRALLEGEAAREAALRATPWELAELERLLQAID
CCCCEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAPREDYPEQMRRDLEFHRALVRLSGNRTLYRLYEDLLATLALARSALPTLSQDEATRRE
HCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HRAILEALLRRDPEEARRAVEAHVFRFRDLVVGRLREEGG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQTLGFRRPNQVREAVYRHLKDLLLSGRFSPGERLSEPLLAQELGVSRTPVREALMRLAE
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EGLVELVPGKGARVRVFAPEEVEEVYGVRALLEGEAAREAALRATPWELAELERLLQAID
CCCCEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
EAPREDYPEQMRRDLEFHRALVRLSGNRTLYRLYEDLLATLALARSALPTLSQDEATRRE
HCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HRAILEALLRRDPEEARRAVEAHVFRFRDLVVGRLREEGG
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]