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The map label for this gene is potB [H]

Identifier: 55981208

GI number: 55981208

Start: 1175040

End: 1175900

Strand: Reverse

Name: potB [H]

Synonym: TTHA1239

Alternate gene names: 55981208

Gene position: 1175900-1175040 (Counterclockwise)

Preceding gene: 55981209

Following gene: 55981207

Centisome position: 63.57

GC content: 66.32

Gene sequence:

>861_bases
ATGAATGAGGCGGCGACACCCCTACAGCGGCTTTTCCGCATCCTGGTCACCGTGGGTCCGGGGGCCCTTTGGCTTTTCCT
CTTCGTCCTCTTGCCCACCTTTCTCGTCCTCCTCGCCTCCTTCATGAGCCGGGGGCCTTACGGGGAGCTTTCCGGCCCCT
GGGGCTTCCACAACTACCTCCGGCTCCTCGAGGCCCCTTACCTCAAGGCCTTCGCGCAAAGCCTCCTCCTCGGGGCCCTC
ACCACCCTGCTCGCCGCCCTCCTGGGCTATCCCCTCGCCTTCTACCTCGCGGGCCACCCCCGGCGGGACCTGCTTCTCCT
CCTTCTCCTCCTGCCCTTCTTCACCAACTTCCTCATCCGGGTCTACGCCTGGCTCGTCCTCCTGCAGAGGGAGGGCCTGG
TGAACGCCTTCCTCCAGGCCTTTGGCCTCGGGCCCCTCGGCCTCTACCCTTCCTTCCTGGCGGTCCTCCTCGCGAGCCTC
TACACCTTCCTGCCCTTCTTCGTCCTCCCCGTCTACGCCAGCGTGGAGCGGATTGACTGGCAGCTTCTGGAGGCGGCCTA
CGACCTCGGGGCGAGGCCCTTTAGGGCCTTCCTCCACGCCGTCCTTCCCCAGACCTACCCGGGGCTTTTCGCGGGAAGCG
TCCTCGTCTTCATCCCCGCCATGGGCACCTTCGTGGTGGCCGACCTCTTGGGGGCGGGGCGGGTGGTCCTCATCGGCAAC
CTCATCCAGCAGCAGTTCGGCGTCACCCGGGACTGGGCCTTCGGGGCGGCCTTGAGCGTCTTCCTCATGGCCTTCGTCCT
CTTAAGCCTCTACCTCTACGCCCGCCTCCAGGGGGAAAGGGGGCTTGAGGACCTGGTATGA

Upstream 100 bases:

>100_bases
TATACCCTGAACCAGGACCTGCAGGAGCCCGGGGCCGAGGAGTTCGGGTACGGGGAGGAGGTCCTCTGCTACCTCCCCCC
GGAGAACCTGGTGGTGGTCC

Downstream 100 bases:

>100_bases
GGCGGCTCCTCTCCTTCCACGCCCTTTTGGTCTACCTCTTCCTCTACCTGCCCATCCTCGTCGTCGTGGCCCTCTCCTTC
AACGAGAGCCGCAGGGGGGT

Product: spermidine/putrescine ABC transporter permease

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MNEAATPLQRLFRILVTVGPGALWLFLFVLLPTFLVLLASFMSRGPYGELSGPWGFHNYLRLLEAPYLKAFAQSLLLGAL
TTLLAALLGYPLAFYLAGHPRRDLLLLLLLLPFFTNFLIRVYAWLVLLQREGLVNAFLQAFGLGPLGLYPSFLAVLLASL
YTFLPFFVLPVYASVERIDWQLLEAAYDLGARPFRAFLHAVLPQTYPGLFAGSVLVFIPAMGTFVVADLLGAGRVVLIGN
LIQQQFGVTRDWAFGAALSVFLMAFVLLSLYLYARLQGERGLEDLV

Sequences:

>Translated_286_residues
MNEAATPLQRLFRILVTVGPGALWLFLFVLLPTFLVLLASFMSRGPYGELSGPWGFHNYLRLLEAPYLKAFAQSLLLGAL
TTLLAALLGYPLAFYLAGHPRRDLLLLLLLLPFFTNFLIRVYAWLVLLQREGLVNAFLQAFGLGPLGLYPSFLAVLLASL
YTFLPFFVLPVYASVERIDWQLLEAAYDLGARPFRAFLHAVLPQTYPGLFAGSVLVFIPAMGTFVVADLLGAGRVVLIGN
LIQQQFGVTRDWAFGAALSVFLMAFVLLSLYLYARLQGERGLEDLV
>Mature_286_residues
MNEAATPLQRLFRILVTVGPGALWLFLFVLLPTFLVLLASFMSRGPYGELSGPWGFHNYLRLLEAPYLKAFAQSLLLGAL
TTLLAALLGYPLAFYLAGHPRRDLLLLLLLLPFFTNFLIRVYAWLVLLQREGLVNAFLQAFGLGPLGLYPSFLAVLLASL
YTFLPFFVLPVYASVERIDWQLLEAAYDLGARPFRAFLHAVLPQTYPGLFAGSVLVFIPAMGTFVVADLLGAGRVVLIGN
LIQQQFGVTRDWAFGAALSVFLMAFVLLSLYLYARLQGERGLEDLV

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787369, Length=264, Percent_Identity=41.2878787878788, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787080, Length=244, Percent_Identity=40.9836065573771, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1787713, Length=216, Percent_Identity=34.2592592592593, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31724; Mature: 31724

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEAATPLQRLFRILVTVGPGALWLFLFVLLPTFLVLLASFMSRGPYGELSGPWGFHNYL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
RLLEAPYLKAFAQSLLLGALTTLLAALLGYPLAFYLAGHPRRDLLLLLLLLPFFTNFLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VYAWLVLLQREGLVNAFLQAFGLGPLGLYPSFLAVLLASLYTFLPFFVLPVYASVERIDW
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLEAAYDLGARPFRAFLHAVLPQTYPGLFAGSVLVFIPAMGTFVVADLLGAGRVVLIGN
HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LIQQQFGVTRDWAFGAALSVFLMAFVLLSLYLYARLQGERGLEDLV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
>Mature Secondary Structure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HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]