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The map label for this gene is qseB [H]

Identifier: 55980971

GI number: 55980971

Start: 948268

End: 948990

Strand: Direct

Name: qseB [H]

Synonym: TTHA1002

Alternate gene names: 55980971

Gene position: 948268-948990 (Clockwise)

Preceding gene: 55980966

Following gene: 55980972

Centisome position: 51.26

GC content: 71.92

Gene sequence:

>723_bases
ATGGGGTGGCCTCAGCGCCCCCAGGGTAACCCCCGCCTAACCGGGCCGGGCCATACTGGAAGGGTGCAGGTGCTTCTTCT
GGAGGACGAGCCCCGCCTGGGGCAGGCGGTGGCCCGGGCCCTCGCCGCCCAGGGCTACGGGGTTCGCTGGGCCAGGAGCC
TGGGAGAGGCCCGGGAGGCCTTCCTGGAGCTGGAGCCCGACCTCATGGTCCTGGACGTGCGCCTTCCCGAGGACGAGGAC
GGCGGCTTCCGCTTCGCAAAGGAGGCGCGGGAAGCGGGCTACAAGGGGCCCATCCTCTTCCTCACCGCCCGGGACGCCCT
CGAGGACCGCGTCCAGGGCCTGGACCTGGGCGGGGACGACTACCTGGTGAAGCCCTTCCACCTGGAGGAGCTTTTGGCCC
GGGTGCGGGCCCTCCTCCGCCGGGCCTCGGAGGTGAAGGCCTCCCGGGTGCGGCTTGGCCCCTTGGAGGTGGACCTGGCG
GGGCGGGGGGTCTACCTGGCGGGCAGGCGGGTGGACCTCTCCCTGAAGGAGTTCGCGCTCCTGGAAACCCTCCTCCTCCA
CCCGGGCCGGGTCTTCGCCCCCGAGGAGCTCGCCGAGCGGGTCTTCGGCGACCCCGAGAAGGTGGGGGCGGTGAAGGTCT
ACGTCCACTACCTCCGGCAGAAGCTCTTCCCCGAGGTGGTGCGCACCGTGCCCGGAGGGTACCGGCTCGGCCATGAGCCT
TAA

Upstream 100 bases:

>100_bases
CCAAAACCCCTTCTCACCTGGCCCCGTACCGGCCCATGGAAGGGAGGGTAGGGCAGTCCGGTTAGACGGCCGTTAGGCGC
CCGCACCTGGGTTTCGCAGC

Downstream 100 bases:

>100_bases
GGCGCGGCTCGCCCTCTTCTTCGCCCTTTCCATCGGGCTCGCCCTCTTCTTCCAAGGGGCCTTGAGCTACGTGGCCTTCA
AAGGGCTCATAGAGGCCGAC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MGWPQRPQGNPRLTGPGHTGRVQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREAFLELEPDLMVLDVRLPEDED
GGFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRALLRRASEVKASRVRLGPLEVDLA
GRGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELAERVFGDPEKVGAVKVYVHYLRQKLFPEVVRTVPGGYRLGHEP

Sequences:

>Translated_240_residues
MGWPQRPQGNPRLTGPGHTGRVQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREAFLELEPDLMVLDVRLPEDED
GGFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRALLRRASEVKASRVRLGPLEVDLA
GRGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELAERVFGDPEKVGAVKVYVHYLRQKLFPEVVRTVPGGYRLGHEP
>Mature_239_residues
GWPQRPQGNPRLTGPGHTGRVQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREAFLELEPDLMVLDVRLPEDEDG
GFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDDYLVKPFHLEELLARVRALLRRASEVKASRVRLGPLEVDLAG
RGVYLAGRRVDLSLKEFALLETLLLHPGRVFAPEELAERVFGDPEKVGAVKVYVHYLRQKLFPEVVRTVPGGYRLGHEP

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC. Currently it is not known whether this effect is direct or not [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=40.7239819004525, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=41.1764705882353, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=38.5650224215247, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=34.5454545454545, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=34.5291479820628, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=34.6666666666667, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790860, Length=210, Percent_Identity=34.7619047619048, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786911, Length=205, Percent_Identity=35.1219512195122, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788394, Length=205, Percent_Identity=32.6829268292683, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=30.3418803418803, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=29.004329004329, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI2367329, Length=210, Percent_Identity=36.1904761904762, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=27.7533039647577, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788550, Length=131, Percent_Identity=31.2977099236641, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI145693140, Length=226, Percent_Identity=26.5486725663717, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26744; Mature: 26613

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWPQRPQGNPRLTGPGHTGRVQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREA
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FLELEPDLMVLDVRLPEDEDGGFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDD
HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCC
YLVKPFHLEELLARVRALLRRASEVKASRVRLGPLEVDLAGRGVYLAGRRVDLSLKEFAL
CEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCEEEECCEECCHHHHHHH
LETLLLHPGRVFAPEELAERVFGDPEKVGAVKVYVHYLRQKLFPEVVRTVPGGYRLGHEP
HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GWPQRPQGNPRLTGPGHTGRVQVLLLEDEPRLGQAVARALAAQGYGVRWARSLGEAREA
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
FLELEPDLMVLDVRLPEDEDGGFRFAKEAREAGYKGPILFLTARDALEDRVQGLDLGGDD
HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCCCC
YLVKPFHLEELLARVRALLRRASEVKASRVRLGPLEVDLAGRGVYLAGRRVDLSLKEFAL
CEECCCCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEECCCCEEEECCEECCHHHHHHH
LETLLLHPGRVFAPEELAERVFGDPEKVGAVKVYVHYLRQKLFPEVVRTVPGGYRLGHEP
HHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796; 11929534 [H]