| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is 55980968
Identifier: 55980968
GI number: 55980968
Start: 944934
End: 947144
Strand: Reverse
Name: 55980968
Synonym: TTHA0999
Alternate gene names: NA
Gene position: 947144-944934 (Counterclockwise)
Preceding gene: 55980969
Following gene: 55980967
Centisome position: 51.2
GC content: 73.41
Gene sequence:
>2211_bases ATGAAGCCCGGCCTCCATATCGTCCAGGGGCCGCCCGCCTCGGGGAAGACCCGTCTGGCGCTGGCGTGGGCCCTGGAGGT CCTTGGGAGGCGGGGCCGCGTCTTCTGGGTGGGGCTTCCCCACCAGCGGGCCTATGTCTACCGGCTGCTTTCGGAGGAAG GGGCCTTTTTGGGCCTGGAGTTCCTCTCCTTCCAGGCCCTCTACTACCGGGTTTTGGCCGAGGCGGGGTGGCTTAAGCCC CTCCTTCCCGGAGCGGGGCGGGTGGCCCTGGTGGGGGAGGCCTTGCGCCGGGCCGGGGAGGGGCCCGTGGCCCCGGGGGA GGCCCGGCTCTTCGCCCGGGCCATCGCCGAGCTGAAGCGGTACGGGATCTCCCCCTTCGCCCTGCCCAAGGAGGGGGAGG CCGGGCGGCTTAGGCGGGTCTACCGCCTCTACGAGCGCCTGAAGGCGGGAAGCCTGGACTACGACGACTTCCGGCACCGG GCCCTAAAAGCCCCCTTGCGCCTCTTCCCCTGGCCCGACCTCGTGGTGGTGGACGGGTTCCGGGAGGTGGGGCCTTTGGA CCTCCGCTTCCTCCGGCGGCTTTCCGAACGGGTTCCCGTCCTCCTTACCCTGGAGGTGCTCCCCGAGGGGTGCACCCCCC ACCGCGTCCTCGAGGCCCGGCCGGTCGCCCGCCGGGTCTTCCGCCTCGCCAACCCCGTGGAGGAGGCCCGCTACCTCCTC CGGGCCCTGAAGCGGGCCTTGGCGCCAAAGGCGCTCGGGGGGGAGGGGCTTGCCCCGGAGGACGTTCTCGTGGTGGCCCC GCCGGAGCGCATCGGGGGACTCATGCTCCTTAAGGACGAATACGGCCTTCCCCTCGAGGACGGCCGGGAGCGCGCCCTGG CGGAGACGGAAGAAGGGGAGCGGGTCTTCGCCCTCCTCAACCCCTTCCCCACGGGGCGGGACCTCCTTGCCCTGGGCTTT TCCGCTTTGGGGCGCAAGGCGCTGAGGCTCGGGCTTGCCGGGGAGGAGGCCCTAAGGGCCTTGGCGGAGCGGGAGGGTTT GGAGGCGGAGTGGGAGGCCTTCCTGCGCCTGCGCACCCCGGGCCCCGACCTCGAGGCCTGGGCCGAGGCGGCCTTGGAGG CCTTGGGGGTGGAGGCCAAGGAGGTCTTCCTCTCCCGCTTCCGCATGGCCCTCCGGGTGGACCGGGGCGAGCCTTTGGCC TGGTGGCGGAGCCTCCTCCTGGACGAGGTTCTGCCCCCGGAGGTGGGCCGGGGCGTGGCCGTCCTCCCCCCCTTGAGGGC CACGGGGGTGCGGGCCCGGAGGGCCTACGTGCTGGAGTGGGTGGCGGGCCGGTACACCCTGGGGGAGCGGGAGGACTACT TCCTCCTGGAGGACCTGCGGGAGCAGGGCCTCCTGAAGGGCCTTCCCCGGCGGCTTCGCGGGCTTGACCCCTTGTTTTTG GAGGAGCTTTCCACCCGGGGGGAGGAGGTGGTCCTCCTCTACCCCGAGGCCGGGCCCGGGGGGCCTGTGGAGCCCTTGGC GGCGGGGGAGCGGCCCGAGGCCCTGCCCCCGGCGAGCCGCCTCGAGGCCCTGCCCCAGGCCCCCTTCCGCCCCGCCCACC CCACCTCGCCCGCCTCCCCGCCCCACGTGGAGGCCCTCCGCCGCTATTTGGAGTGTCCCTTTAGGGCTTACCTGGAGCGC TACCCCCTCCGGGACGGGGAGGAAAGCCCCTGGCGCGCCCTGCCTTCCCCCGTGGACCTGGGGGCCTTGGGGGGGCTTTT CGCCGACGGGCGGGTGGGGCCCTGGCTTCGCGCCCACGGGGCCCACCTCCAGGGCCTGAGGCTTTACGTCCTCTGGCCCG GGCGGCGCTACCGGCTCCGCCTGGACGGGGTGCGGTGGGAGGGGCGGGCGGTCCACCTCTACCGCCTCTTGGGCGAGGGG GCCGAGCCCGACCTGAGCCCCAAGCGGCGCTGGACGGAGTGGCTCGCCCTCAAGGCCCTCCTTCAGCGGGAGGACGTGGA GGCCGTTCACCTTTGGGCCTGGCCCTGGCTGGGCAGGCCCAGGCCCGTGGGGAAGGGGGTTTACCGCAAGGGGGATGCGC TTCCCGCCCTCAAGGAGGTGGAGCCCCTTCTGGAGAAGGCCCTCCGGTCCTGGGGCGCCTTTCCCCCGAGGCCCGGGCCC CACTGCCACGCCTGCGGCCTCGCCGACCTTTGCCGGAAGGAGGAGGAGTGA
Upstream 100 bases:
>100_bases TCGGCCTAGGGGGCCTCCTCTTCCTCGCCCTCGCCCTCTACGCCGCCCGCTAAGTTCCCCACCGCGGCTTCCGCCGGGGG CCGGGTAGAATGGAGCCGCT
Downstream 100 bases:
>100_bases AGCTCTACGTGGCCTCGGCGGGCACGGGGAAGACCCATACCCTGGTGGAGGAGCTTTTGGCCCTGGTGAAGGGGGGTGTG CCCCTGCGGCGCATCGCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MKPGLHIVQGPPASGKTRLALAWALEVLGRRGRVFWVGLPHQRAYVYRLLSEEGAFLGLEFLSFQALYYRVLAEAGWLKP LLPGAGRVALVGEALRRAGEGPVAPGEARLFARAIAELKRYGISPFALPKEGEAGRLRRVYRLYERLKAGSLDYDDFRHR ALKAPLRLFPWPDLVVVDGFREVGPLDLRFLRRLSERVPVLLTLEVLPEGCTPHRVLEARPVARRVFRLANPVEEARYLL RALKRALAPKALGGEGLAPEDVLVVAPPERIGGLMLLKDEYGLPLEDGRERALAETEEGERVFALLNPFPTGRDLLALGF SALGRKALRLGLAGEEALRALAEREGLEAEWEAFLRLRTPGPDLEAWAEAALEALGVEAKEVFLSRFRMALRVDRGEPLA WWRSLLLDEVLPPEVGRGVAVLPPLRATGVRARRAYVLEWVAGRYTLGEREDYFLLEDLREQGLLKGLPRRLRGLDPLFL EELSTRGEEVVLLYPEAGPGGPVEPLAAGERPEALPPASRLEALPQAPFRPAHPTSPASPPHVEALRRYLECPFRAYLER YPLRDGEESPWRALPSPVDLGALGGLFADGRVGPWLRAHGAHLQGLRLYVLWPGRRYRLRLDGVRWEGRAVHLYRLLGEG AEPDLSPKRRWTEWLALKALLQREDVEAVHLWAWPWLGRPRPVGKGVYRKGDALPALKEVEPLLEKALRSWGAFPPRPGP HCHACGLADLCRKEEE
Sequences:
>Translated_736_residues MKPGLHIVQGPPASGKTRLALAWALEVLGRRGRVFWVGLPHQRAYVYRLLSEEGAFLGLEFLSFQALYYRVLAEAGWLKP LLPGAGRVALVGEALRRAGEGPVAPGEARLFARAIAELKRYGISPFALPKEGEAGRLRRVYRLYERLKAGSLDYDDFRHR ALKAPLRLFPWPDLVVVDGFREVGPLDLRFLRRLSERVPVLLTLEVLPEGCTPHRVLEARPVARRVFRLANPVEEARYLL RALKRALAPKALGGEGLAPEDVLVVAPPERIGGLMLLKDEYGLPLEDGRERALAETEEGERVFALLNPFPTGRDLLALGF SALGRKALRLGLAGEEALRALAEREGLEAEWEAFLRLRTPGPDLEAWAEAALEALGVEAKEVFLSRFRMALRVDRGEPLA WWRSLLLDEVLPPEVGRGVAVLPPLRATGVRARRAYVLEWVAGRYTLGEREDYFLLEDLREQGLLKGLPRRLRGLDPLFL EELSTRGEEVVLLYPEAGPGGPVEPLAAGERPEALPPASRLEALPQAPFRPAHPTSPASPPHVEALRRYLECPFRAYLER YPLRDGEESPWRALPSPVDLGALGGLFADGRVGPWLRAHGAHLQGLRLYVLWPGRRYRLRLDGVRWEGRAVHLYRLLGEG AEPDLSPKRRWTEWLALKALLQREDVEAVHLWAWPWLGRPRPVGKGVYRKGDALPALKEVEPLLEKALRSWGAFPPRPGP HCHACGLADLCRKEEE >Mature_736_residues MKPGLHIVQGPPASGKTRLALAWALEVLGRRGRVFWVGLPHQRAYVYRLLSEEGAFLGLEFLSFQALYYRVLAEAGWLKP LLPGAGRVALVGEALRRAGEGPVAPGEARLFARAIAELKRYGISPFALPKEGEAGRLRRVYRLYERLKAGSLDYDDFRHR ALKAPLRLFPWPDLVVVDGFREVGPLDLRFLRRLSERVPVLLTLEVLPEGCTPHRVLEARPVARRVFRLANPVEEARYLL RALKRALAPKALGGEGLAPEDVLVVAPPERIGGLMLLKDEYGLPLEDGRERALAETEEGERVFALLNPFPTGRDLLALGF SALGRKALRLGLAGEEALRALAEREGLEAEWEAFLRLRTPGPDLEAWAEAALEALGVEAKEVFLSRFRMALRVDRGEPLA WWRSLLLDEVLPPEVGRGVAVLPPLRATGVRARRAYVLEWVAGRYTLGEREDYFLLEDLREQGLLKGLPRRLRGLDPLFL EELSTRGEEVVLLYPEAGPGGPVEPLAAGERPEALPPASRLEALPQAPFRPAHPTSPASPPHVEALRRYLECPFRAYLER YPLRDGEESPWRALPSPVDLGALGGLFADGRVGPWLRAHGAHLQGLRLYVLWPGRRYRLRLDGVRWEGRAVHLYRLLGEG AEPDLSPKRRWTEWLALKALLQREDVEAVHLWAWPWLGRPRPVGKGVYRKGDALPALKEVEPLLEKALRSWGAFPPRPGP HCHACGLADLCRKEEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82343; Mature: 82343
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPGLHIVQGPPASGKTRLALAWALEVLGRRGRVFWVGLPHQRAYVYRLLSEEGAFLGLE CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEHHH FLSFQALYYRVLAEAGWLKPLLPGAGRVALVGEALRRAGEGPVAPGEARLFARAIAELKR HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGISPFALPKEGEAGRLRRVYRLYERLKAGSLDYDDFRHRALKAPLRLFPWPDLVVVDGF CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCEEEECCC REVGPLDLRFLRRLSERVPVLLTLEVLPEGCTPHRVLEARPVARRVFRLANPVEEARYLL HHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHH RALKRALAPKALGGEGLAPEDVLVVAPPERIGGLMLLKDEYGLPLEDGRERALAETEEGE HHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCEEEEECCCCCCCCCCHHHHHHCCCCCC RVFALLNPFPTGRDLLALGFSALGRKALRLGLAGEEALRALAEREGLEAEWEAFLRLRTP EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEECCC GPDLEAWAEAALEALGVEAKEVFLSRFRMALRVDRGEPLAWWRSLLLDEVLPPEVGRGVA CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEE VLPPLRATGVRARRAYVLEWVAGRYTLGEREDYFLLEDLREQGLLKGLPRRLRGLDPLFL ECCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH EELSTRGEEVVLLYPEAGPGGPVEPLAAGERPEALPPASRLEALPQAPFRPAHPTSPASP HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC PHVEALRRYLECPFRAYLERYPLRDGEESPWRALPSPVDLGALGGLFADGRVGPWLRAHG HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCHHHHCC AHLQGLRLYVLWPGRRYRLRLDGVRWEGRAVHLYRLLGEGAEPDLSPKRRWTEWLALKAL CCCCCEEEEEEECCCEEEEEECCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH LQREDVEAVHLWAWPWLGRPRPVGKGVYRKGDALPALKEVEPLLEKALRSWGAFPPRPGP HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC HCHACGLADLCRKEEE CCCCCCHHHHHHCCCC >Mature Secondary Structure MKPGLHIVQGPPASGKTRLALAWALEVLGRRGRVFWVGLPHQRAYVYRLLSEEGAFLGLE CCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEHHH FLSFQALYYRVLAEAGWLKPLLPGAGRVALVGEALRRAGEGPVAPGEARLFARAIAELKR HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH YGISPFALPKEGEAGRLRRVYRLYERLKAGSLDYDDFRHRALKAPLRLFPWPDLVVVDGF CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHCCCCCEEEECCC REVGPLDLRFLRRLSERVPVLLTLEVLPEGCTPHRVLEARPVARRVFRLANPVEEARYLL HHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHH RALKRALAPKALGGEGLAPEDVLVVAPPERIGGLMLLKDEYGLPLEDGRERALAETEEGE HHHHHHHCCCCCCCCCCCCCCEEEEECHHHHCCEEEEECCCCCCCCCCHHHHHHCCCCCC RVFALLNPFPTGRDLLALGFSALGRKALRLGLAGEEALRALAEREGLEAEWEAFLRLRTP EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHEEECCC GPDLEAWAEAALEALGVEAKEVFLSRFRMALRVDRGEPLAWWRSLLLDEVLPPEVGRGVA CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEE VLPPLRATGVRARRAYVLEWVAGRYTLGEREDYFLLEDLREQGLLKGLPRRLRGLDPLFL ECCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH EELSTRGEEVVLLYPEAGPGGPVEPLAAGERPEALPPASRLEALPQAPFRPAHPTSPASP HHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC PHVEALRRYLECPFRAYLERYPLRDGEESPWRALPSPVDLGALGGLFADGRVGPWLRAHG HHHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCHHHHCC AHLQGLRLYVLWPGRRYRLRLDGVRWEGRAVHLYRLLGEGAEPDLSPKRRWTEWLALKAL CCCCCEEEEEEECCCEEEEEECCEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH LQREDVEAVHLWAWPWLGRPRPVGKGVYRKGDALPALKEVEPLLEKALRSWGAFPPRPGP HHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC HCHACGLADLCRKEEE CCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA