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The map label for this gene is pdxS [H]

Identifier: 55980673

GI number: 55980673

Start: 667816

End: 668709

Strand: Direct

Name: pdxS [H]

Synonym: TTHA0704

Alternate gene names: 55980673

Gene position: 667816-668709 (Clockwise)

Preceding gene: 55980672

Following gene: 55980674

Centisome position: 36.1

GC content: 68.01

Gene sequence:

>894_bases
ATGGAGGGCGGGATGGAAAAGGGCACCTTCCAGATCAAGACGGGCTTTGCGGAGATGTTCAAGGGCGGGGTGATCATGGA
CGTGACCACCCCGGAGCAGGCGGTGATCGCCGAGGAGGCGGGGGCGGTGGCGGTGATGGCCCTGGAGCGGGTCCCCGCGG
ACATCCGCGCCCAGGGGGGCGTGGCCCGCATGTCCGACCCCAAGATCATCAAGGAGATCATGGCGGCCGTCTCCATCCCC
GTCATGGCCAAGGTGAGGATCGGCCACTTCGTGGAGGCCATGATCCTCGAGGCCATCGGGGTGGACTTCATTGACGAGTC
CGAGGTGCTGACCCCCGCCGACGAGGAGCACCACATTGACAAGTGGAAGTTCAAGGTGCCCTTCGTCTGCGGGGCGAGGA
ACCTGGGGGAGGCCCTGAGGCGCATCGCCGAGGGGGCGGCCATGATCCGCACCAAGGGGGAGGCGGGGACGGGCAACGTG
GTGGAGGCGGTGCGCCACGCCCGCACCATGTGGAAGGAGATCCGCTACGTCCAGTCCCTCCGGGAGGACGAGCTCATGGC
CTACGCCAAGGAGATCGGGGCGCCCTTTGAGCTCGTCAAGTGGGTGCACGACCACGGCCGCCTCCCCGTGGTGAACTTCG
CCGCCGGCGGCATCGCCACCCCCGCCGACGCCGCCCTCATGATGCACCTGGGCATGGACGGGGTCTTCGTGGGAAGCGGC
ATCTTCAAGTCGGGGGACCCCAGGAAGCGGGCCCGGGCCATCGTGCGGGCCGTGGCCCACTACAACGACCCCGAGGTGCT
GGCCGAGGTCAGCGAGGACCTGGGCGAGCCCATGGTGGGCATCAACCTGGACCAGCTCAAGGAGGAGGAAAGGCTTGCCA
AGCGGGGCTGGTAG

Upstream 100 bases:

>100_bases
GGGCTCGGCAACGCGGGGCTAAAGGGGGCCCTTTTGGGGCGCCACGTGCAAGGCCCCCTGGGGTTTTGGGCCCTTGACCC
CGGGAGGCGTAAGCTGGAGG

Downstream 100 bases:

>100_bases
GGCGGTCTGCGGGGTCTACGAGATCCACCCGGAAAGGGTGGAGAAGGCCCGGGCCGCCCTGCCCGAGGAGAGGGTGGTCA
AGGAGGCCGCCCTCCTCCTC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEGGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIP
VMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNV
VEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG
IFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRGW

Sequences:

>Translated_297_residues
MEGGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIP
VMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNV
VEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG
IFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRGW
>Mature_297_residues
MEGGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIP
VMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNV
VEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG
IFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring [H]

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=292, Percent_Identity=64.7260273972603, Blast_Score=379, Evalue=1e-106,
Organism=Saccharomyces cerevisiae, GI6321049, Length=295, Percent_Identity=65.0847457627119, Blast_Score=376, Evalue=1e-105,
Organism=Saccharomyces cerevisiae, GI6323996, Length=295, Percent_Identity=64.7457627118644, Blast_Score=376, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852 [H]

Pfam domain/function: PF01680 SOR_SNZ [H]

EC number: NA

Molecular weight: Translated: 32401; Mature: 32401

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS01235 PDXS_SNZ_1 ; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGG
CCCCCCCCEEEEECCHHHHHCCCEEEEECCCCHHHHHHHCCCCEEHHHHHCCHHHHCCCC
VARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHID
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
KWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSL
CEEEECCEEECCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCC
IFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRGW
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEGGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGG
CCCCCCCCEEEEECCHHHHHCCCEEEEECCCCHHHHHHHCCCCEEHHHHHCCHHHHCCCC
VARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHID
CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
KWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSL
CEEEECCEEECCHHHHHHHHHHHCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
REDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEECCC
IFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRGW
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA