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The map label for this gene is yebA [H]

Identifier: 55980672

GI number: 55980672

Start: 666579

End: 667694

Strand: Direct

Name: yebA [H]

Synonym: TTHA0703

Alternate gene names: 55980672

Gene position: 666579-667694 (Clockwise)

Preceding gene: 55980665

Following gene: 55980673

Centisome position: 36.04

GC content: 70.97

Gene sequence:

>1116_bases
ATGGAGGTCAAGGTCCTTTCCCCCATCCCCCGGCCGGAGCCCAAGGCGGTGGAGGTTCCCCCGGCCCCCCACAAGGTCTG
GGTGGTCTACGAGGTGAAGCCCGGGGACGCCTTGGAGGCCATCGCCAGGCGCTTCGGGGTGGATCCGCGGCACATCCTCT
GGTCCAGCGGGCTGAAGGACGCGAGGCTCTACCCCGGCCAGCGCCTCCTCATCCCCATCGTGGACCAGGAGGCGGACGCT
CCCCCCAGGCTTCCCCCCGGGGTGGAGGCCTACCGCGTCCGGCCCGGGGACACCCTGGAGGCCATCGCCAAGCGCTTCGG
GGTGAGCCTTCTGGACCTCGTTTCCGCCAACCCGACCCTGGAGAGCCTGGACCGGCTGGTGGTGGGAAGCGAGCTCTACA
TCCCTCGGAAGGCCAAGGGGCTCGTGGTGGTTTTGGGGGAGGGGCAGACCCTCTTGGACCTGGCGGAGCGCTTCGGCCTT
TCCCCCGTGGAGCTCGCCCGGGCGAACGGGGTGAAGAACCCCCTGGCCCTCCGCCCCGGGGACCGGGTCCTCATCCCGGG
GCTTCAGGCCAAGACCACCTACGAGCGCCTCCTCGCCAAGCAGGAGGCGGAGCGGAGGGCCCGCCTCGAGGCGGAAAGGC
GCCGCCAGGAGGAGCTCAGGCGCCTGGCGGAGCAAAGGAGGCGGCAGCAAGAGGCCCAGAGGCGGCAGGCCCAGGTGCGC
CAGGTGAGCTACCGGGAAGGGGGGATGCGCTGGCCCCTGGCGAACTTTCAGATCACCACCTACTTCGGGGGGAGGACCCC
CTTCCAGCGCTTCCACACGGGGATTGACCTCGCGGCCCCCGCGGGCACGCCCATCTACGCCGCCAAGGCGGGCCGCGTGG
AGGTGGCGGGCTGGAGCTCGGTGGGCTACGGCTTCCACGTGGTCCTGGACCACGGGGGGGGGTTGGAGACCCTTTACGCC
CACATGTCCCGCATCGCCGTGCGGGCGGGGCAGTGGGTGGAGGCGGGGCAGGTGATCGGCTACGTGGGCTCCACCGGCTG
GTCCACGGGGCCCCACCTCCACTTTGAGGTGCGGGTGAACGGCCTCGTCAAGAACCCCTTGAGCTACCTCCCCTAG

Upstream 100 bases:

>100_bases
TGGTAAAATGCGGGCGGCTTTAGAGGCCTCCTGGAGGTGAAGCTTGCGGTTGGTCCGAGGGGTATTGTGTGCGCTCGCGT
TCCTGCCCGCGGCGAAGGGT

Downstream 100 bases:

>100_bases
AAGCGCTAAGGGTCCAAACGTGGGCTCGGCAACGCGGGGCTAAAGGGGGCCCTTTTGGGGCGCCACGTGCAAGGCCCCCT
GGGGTTTTGGGCCCTTGACC

Product: cell wall endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MEVKVLSPIPRPEPKAVEVPPAPHKVWVVYEVKPGDALEAIARRFGVDPRHILWSSGLKDARLYPGQRLLIPIVDQEADA
PPRLPPGVEAYRVRPGDTLEAIAKRFGVSLLDLVSANPTLESLDRLVVGSELYIPRKAKGLVVVLGEGQTLLDLAERFGL
SPVELARANGVKNPLALRPGDRVLIPGLQAKTTYERLLAKQEAERRARLEAERRRQEELRRLAEQRRRQQEAQRRQAQVR
QVSYREGGMRWPLANFQITTYFGGRTPFQRFHTGIDLAAPAGTPIYAAKAGRVEVAGWSSVGYGFHVVLDHGGGLETLYA
HMSRIAVRAGQWVEAGQVIGYVGSTGWSTGPHLHFEVRVNGLVKNPLSYLP

Sequences:

>Translated_371_residues
MEVKVLSPIPRPEPKAVEVPPAPHKVWVVYEVKPGDALEAIARRFGVDPRHILWSSGLKDARLYPGQRLLIPIVDQEADA
PPRLPPGVEAYRVRPGDTLEAIAKRFGVSLLDLVSANPTLESLDRLVVGSELYIPRKAKGLVVVLGEGQTLLDLAERFGL
SPVELARANGVKNPLALRPGDRVLIPGLQAKTTYERLLAKQEAERRARLEAERRRQEELRRLAEQRRRQQEAQRRQAQVR
QVSYREGGMRWPLANFQITTYFGGRTPFQRFHTGIDLAAPAGTPIYAAKAGRVEVAGWSSVGYGFHVVLDHGGGLETLYA
HMSRIAVRAGQWVEAGQVIGYVGSTGWSTGPHLHFEVRVNGLVKNPLSYLP
>Mature_371_residues
MEVKVLSPIPRPEPKAVEVPPAPHKVWVVYEVKPGDALEAIARRFGVDPRHILWSSGLKDARLYPGQRLLIPIVDQEADA
PPRLPPGVEAYRVRPGDTLEAIAKRFGVSLLDLVSANPTLESLDRLVVGSELYIPRKAKGLVVVLGEGQTLLDLAERFGL
SPVELARANGVKNPLALRPGDRVLIPGLQAKTTYERLLAKQEAERRARLEAERRRQEELRRLAEQRRRQQEAQRRQAQVR
QVSYREGGMRWPLANFQITTYFGGRTPFQRFHTGIDLAAPAGTPIYAAKAGRVEVAGWSSVGYGFHVVLDHGGGLETLYA
HMSRIAVRAGQWVEAGQVIGYVGSTGWSTGPHLHFEVRVNGLVKNPLSYLP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=324, Percent_Identity=29.320987654321, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082174, Length=235, Percent_Identity=29.7872340425532, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1789099, Length=284, Percent_Identity=28.8732394366197, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87082297, Length=97, Percent_Identity=41.2371134020619, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 41140; Mature: 41140

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVKVLSPIPRPEPKAVEVPPAPHKVWVVYEVKPGDALEAIARRFGVDPRHILWSSGLKD
CCEEEECCCCCCCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHCCCCCC
ARLYPGQRLLIPIVDQEADAPPRLPPGVEAYRVRPGDTLEAIAKRFGVSLLDLVSANPTL
CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHCCCCCH
ESLDRLVVGSELYIPRKAKGLVVVLGEGQTLLDLAERFGLSPVELARANGVKNPLALRPG
HHHHHHHCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCEECCC
DRVLIPGLQAKTTYERLLAKQEAERRARLEAERRRQEELRRLAEQRRRQQEAQRRQAQVR
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSYREGGMRWPLANFQITTYFGGRTPFQRFHTGIDLAAPAGTPIYAAKAGRVEVAGWSS
HHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEECCCCCCEEEECCCEEEEECCCC
VGYGFHVVLDHGGGLETLYAHMSRIAVRAGQWVEAGQVIGYVGSTGWSTGPHLHFEVRVN
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
GLVKNPLSYLP
CEECCCHHHCC
>Mature Secondary Structure
MEVKVLSPIPRPEPKAVEVPPAPHKVWVVYEVKPGDALEAIARRFGVDPRHILWSSGLKD
CCEEEECCCCCCCCCEEECCCCCCEEEEEEEECCCHHHHHHHHHHCCCHHHHHHCCCCCC
ARLYPGQRLLIPIVDQEADAPPRLPPGVEAYRVRPGDTLEAIAKRFGVSLLDLVSANPTL
CCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCHHHHHHCCCCCH
ESLDRLVVGSELYIPRKAKGLVVVLGEGQTLLDLAERFGLSPVELARANGVKNPLALRPG
HHHHHHHCCCEEECCCCCCCEEEEEECCCHHHHHHHHHCCCHHHHHHHCCCCCCCEECCC
DRVLIPGLQAKTTYERLLAKQEAERRARLEAERRRQEELRRLAEQRRRQQEAQRRQAQVR
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVSYREGGMRWPLANFQITTYFGGRTPFQRFHTGIDLAAPAGTPIYAAKAGRVEVAGWSS
HHHHHCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCEECCCCCCEEEECCCEEEEECCCC
VGYGFHVVLDHGGGLETLYAHMSRIAVRAGQWVEAGQVIGYVGSTGWSTGPHLHFEVRVN
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEC
GLVKNPLSYLP
CEECCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]