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The map label for this gene is yggS [C]

Identifier: 55980532

GI number: 55980532

Start: 525391

End: 526026

Strand: Direct

Name: yggS [C]

Synonym: TTHA0563

Alternate gene names: 55980532

Gene position: 525391-526026 (Clockwise)

Preceding gene: 55980531

Following gene: 55980533

Centisome position: 28.4

GC content: 69.18

Gene sequence:

>636_bases
ATGGGGCTTCCCCAGGTTCTGGAGCGCATCGCGCGGGCCTGCCGCTGCGCGGGGCGCAGGCCCGAGGAGGTCCGCCTCGT
GGCGGTGACCAAGGGGCGCTCGGTGGAGGAGATCCGGGAGAAGGTCCTGGCTTACGGAACCTTTCCCCTGGGGGAGAGCC
GGGTCCAGGAGGCCCTGAAGAAGATGGACCTCCTCCAGGCGGAGTGGCACCTCGTCGGCCACCTGCAGCGCAACAAGGCC
AAGTTCGCTCCCCGCTTCGCCCTCGTCCACTCCCTGGACTCCCTGCGCCTGGCGGAGGCCTTGGAAAAGGTGGGGGAGAA
GGCGGGGGTGCGGCTTAAGGTCCTGGTGGAGGTGAACCTGGGCCGGGAGCCGCAGAAGCACGGGGTCTTGGAGGAGGAGC
TCCCCGAACTCCTCCACCGCCTCCGGGAGATGCCCCACCTCGAGGTCCTGGGCCTCATGACCGTGCCCCCCATCGGCCCC
GAGGCGGTGGTCCGCCCCATCTTTCGCAGGCTTTCCGAGCTTGCCGACCGCTATGGCCTGCCCGAGCGCTCCATGGGCAT
GTCCGACGATTACGAGTGGGCCGTGGAGGAGGGGGCCACCTTGGTGCGCGTGGGCCGGGCCCTTTTTGTAGACTAG

Upstream 100 bases:

>100_bases
TCCTGCGCGTGGCCGCGGAGACGGGCCCCGTCTTCCGCCGGTATGTCCGGGGGATCCTCGCCGAGCTCTGAGGCCGCGCG
GCGCGGGAGGCGAGGGGCGC

Downstream 100 bases:

>100_bases
GGGCGTTCATGGACCTTTCGCCCTTGGACGTACGCTACCAGGAGTTCCCCAGGGCCTTTCGCGGCTACCACCGGGGGGCG
GTGCGGGAGTACCTGGCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MGLPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLQAEWHLVGHLQRNKA
KFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGP
EAVVRPIFRRLSELADRYGLPERSMGMSDDYEWAVEEGATLVRVGRALFVD

Sequences:

>Translated_211_residues
MGLPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLQAEWHLVGHLQRNKA
KFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGP
EAVVRPIFRRLSELADRYGLPERSMGMSDDYEWAVEEGATLVRVGRALFVD
>Mature_210_residues
GLPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALKKMDLLQAEWHLVGHLQRNKAK
FAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNLGREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPE
AVVRPIFRRLSELADRYGLPERSMGMSDDYEWAVEEGATLVRVGRALFVD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=232, Percent_Identity=33.1896551724138, Blast_Score=104, Evalue=7e-23,
Organism=Escherichia coli, GI1789321, Length=223, Percent_Identity=36.322869955157, Blast_Score=120, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI17533025, Length=229, Percent_Identity=32.3144104803493, Blast_Score=91, Evalue=4e-19,
Organism=Drosophila melanogaster, GI45550861, Length=240, Percent_Identity=32.0833333333333, Blast_Score=92, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23835; Mature: 23704

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALK
CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
KMDLLQAEWHLVGHLQRNKAKFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGL
CCCCHHCCCCHHHHHHHHHHHHHCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
PERSMGMSDDYEWAVEEGATLVRVGRALFVD
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure 
GLPQVLERIARACRCAGRRPEEVRLVAVTKGRSVEEIREKVLAYGTFPLGESRVQEALK
CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
KMDLLQAEWHLVGHLQRNKAKFAPRFALVHSLDSLRLAEALEKVGEKAGVRLKVLVEVNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC
GREPQKHGVLEEELPELLHRLREMPHLEVLGLMTVPPIGPEAVVRPIFRRLSELADRYGL
CCCCHHCCCCHHHHHHHHHHHHHCCCEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
PERSMGMSDDYEWAVEEGATLVRVGRALFVD
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]