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The map label for this gene is yjfH [C]

Identifier: 55980265

GI number: 55980265

Start: 286526

End: 287242

Strand: Direct

Name: yjfH [C]

Synonym: TTHA0296

Alternate gene names: 55980265

Gene position: 286526-287242 (Clockwise)

Preceding gene: 55980260

Following gene: 55980266

Centisome position: 15.49

GC content: 72.8

Gene sequence:

>717_bases
ATGTGGATCTACGGGCGAAACCCGGTCCTCGAGGCCCTGCGGGCGGGCCGGGCCCGGCGCGTCCTCGTGGCGAGAGGGGT
GGAGGGCTGGCTCCTGAAGGAGCTGGAAAGGCTCGGGGCCCCGTACACCTTGGTCCCCCGCATTGAGCTGGACACCCTCC
TCCGCACCACCCACCACCAGGGGATCGCCGCCGAGGTGGAGGACCCCCCCTACGCCAGCCTGGAGGACGCCCTCCGCCTC
GCCGCCTCCCGGAAGGAGCCCCCCCTCCTCGTGGCCTTGGACGGCGTCACCGACCCCAGGAACTACGGGGCCATGATCCG
GAGCGCCCTCGCCCTCGGGGCCCACGGGGTGGTCTCCGAGGAGCGCCGGGCCGCCCCCCTCTCTCCCCTCGCCCTGAAGG
CGAGCGCGGGGGCCGCCCTGAAGCTCCCCGTGGTCAAGGTGAAGAACCTCCCCCGGACGCTGAAGGCCCTCAAGGAGGAG
GGGCTTTGGGTCTACGGCCTGGACGTCCGCGGGGAGAAGGCCCCCTGGGAGCTGGACTACGCCCGGCCCCTGGTCCTGGT
GGTGGGCTCCGAGGGGGAGGGGATGCGTCGGCTCGTGCGGGAGACCTGCGACGAGCTCTTCCGCATCCCCATCCGGGAGG
AGGCGGAGTCCCTGAACGCCTCCGTGGCCCTGGGGATCGCCCTCTACCAGGCGAGGCTCGCCCGGGGTGTAGGATAG

Upstream 100 bases:

>100_bases
GAGGCTGCACGGGCTCCCGTCGGTGGGCATCAGGATCTTCTGGCACATGGCTCCATCATACGGGCAGGGCGCGGGCGGCG
CCAGCGGGTAGACTGGGAGG

Downstream 100 bases:

>100_bases
GGGCGTGGACTGGGTCAGGCTCCTCTCCCGCCTCGTCCAGGCGGAAAGCCTCCCCGGGGAGGAAGGGGAGGCGGCGGGGC
TCCTCCTCGAGGCCCTGAAG

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MWIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERLGAPYTLVPRIELDTLLRTTHHQGIAAEVEDPPYASLEDALRL
AASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEE
GLWVYGLDVRGEKAPWELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQARLARGVG

Sequences:

>Translated_238_residues
MWIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERLGAPYTLVPRIELDTLLRTTHHQGIAAEVEDPPYASLEDALRL
AASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEE
GLWVYGLDVRGEKAPWELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQARLARGVG
>Mature_238_residues
MWIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERLGAPYTLVPRIELDTLLRTTHHQGIAAEVEDPPYASLEDALRL
AASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEE
GLWVYGLDVRGEKAPWELDYARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQARLARGVG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=250, Percent_Identity=33.6, Blast_Score=106, Evalue=2e-23,
Organism=Escherichia coli, GI1790623, Length=236, Percent_Identity=40.6779661016949, Blast_Score=150, Evalue=8e-38,
Organism=Escherichia coli, GI1790083, Length=156, Percent_Identity=29.4871794871795, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555908, Length=256, Percent_Identity=30.859375, Blast_Score=82, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 26031; Mature: 26031

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERLGAPYTLVPRIELDTLLRTTHHQ
CEECCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCC
GIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSE
CCEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
ERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPWELDY
HHCCCCCCCEEEECCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCEECC
ARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQARLARGVG
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MWIYGRNPVLEALRAGRARRVLVARGVEGWLLKELERLGAPYTLVPRIELDTLLRTTHHQ
CEECCCCHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCC
GIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAMIRSALALGAHGVVSE
CCEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
ERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVYGLDVRGEKAPWELDY
HHCCCCCCCEEEECCCCCEEEECHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCEECC
ARPLVLVVGSEGEGMRRLVRETCDELFRIPIREEAESLNASVALGIALYQARLARGVG
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA