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The map label for this gene is recF [H]

Identifier: 55980233

GI number: 55980233

Start: 251698

End: 252729

Strand: Direct

Name: recF [H]

Synonym: TTHA0264

Alternate gene names: 55980233

Gene position: 251698-252729 (Clockwise)

Preceding gene: 55980232

Following gene: 55980234

Centisome position: 13.61

GC content: 74.81

Gene sequence:

>1032_bases
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCCGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGACCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTCTCCCGCCGCTACGCCGCCCTCCTTTCCGCCTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCGCCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAACGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGGGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Upstream 100 bases:

>100_bases
TACCGCCTGGCCCCCGAGGGGCCCTACGTCCTCGGGGCCTCCCTCCTCCTCCTCGCCCTCCTCTTCCTTCCCGCCCTCTT
CCGCCGGGCGAGGCTTTAGC

Downstream 100 bases:

>100_bases
AGGAGGTGATCCCCGAGGCCCTGAAGCGGGCCGGGGGCAAGGAGCGGCTCAGGCGGGGCCTCGTCCTCGCCGCCTGGCGG
GAGGTGGCGGGAAAGGACCT

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Sequences:

>Translated_343_residues
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA
>Mature_343_residues
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=324, Percent_Identity=29.0123456790123, Blast_Score=88, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37789; Mature: 37789

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVR
CEEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCHHEEEEEHHHCCCCCCCCHHHHHH
FGEEEAWLHAEVETELGAYRLEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEA
HCCCHHEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHCCHHHEECCCCHHH
VLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGGEGLSAWDRELARYGD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELD
CCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
EARRRAVLAYAQALPQAILAGLEAPPGVPVCSVVRGVVLCPGA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEECCCC
>Mature Secondary Structure
MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVR
CEEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCHHEEEEEHHHCCCCCCCCHHHHHH
FGEEEAWLHAEVETELGAYRLEHRLGPGGREVLLNGKRVSLRTLWELPGSVLVSPLDLEA
HCCCHHEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHCCHHHEECCCCHHH
VLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGGEGLSAWDRELARYGD
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
EIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELD
CCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHH
EARRRAVLAYAQALPQAILAGLEAPPGVPVCSVVRGVVLCPGA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]