| Definition | Thermus thermophilus HB8 chromosome, complete genome. |
|---|---|
| Accession | NC_006461 |
| Length | 1,849,742 |
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The map label for this gene is ybbO [H]
Identifier: 55980210
GI number: 55980210
Start: 233814
End: 234638
Strand: Reverse
Name: ybbO [H]
Synonym: TTHA0241
Alternate gene names: 55980210
Gene position: 234638-233814 (Counterclockwise)
Preceding gene: 55980211
Following gene: 55980209
Centisome position: 12.68
GC content: 72.24
Gene sequence:
>825_bases ATGGCAAGGGCGGTCCTGGTCACGGGGGCGGGGAGCGGCATCGGCCTGGCCACGGCCCGGTTGCTCACGGCCAAGGGGTA CCGGGTCTACGGGGGCGTGCGCCGGGAGGAGGACGCGGCGCGCTTGGCCCAGGAGGGGGTGGTCCCCCTCCTTCTGGATG TGACCCGGGAGGAGGACCTCCTCCGGGCCAGGGAGCGCCTGGTGGGGGAGGGCCTTTGGGGCCTGGTGGTGAACGCCGGC ATTGCCGTGGCGGGGCCTTTAGAGCTCGTTCCTCTTTCCGCCTTCCGGGAGGCCTTGGAGGTGAACGTCCTCGGGGCCTT CGCCACGGTGAAGGCCTTTTTACCCCTCCTCAGGGCCTCCCGGGGCCGGGTGGTCCTCATGGGCTCCGTCTCCGGCCTGG TGGCCCTCCCCCTCATGGGGCCCTACGCCGCGAGCAAGTTCGCCCTCGAGGCCCTGGCGGACGCCCTCAGGGTGGAGCTC CTTCCCTTCGGGGTCAGGGTGGTCCTCATAGAGCCCGGCTCCGTGGCCACCCCCATCTGGGAGCGCTCCTTAAGGCGGGC CGAGGGCTACCTGGAACCCCCGCCCCCCGGGACCGAGGGGGTGTATGGCCGCTACCTGGAGGTGGCGCGGCGCGTGGCGG AACGGAGCGCCAAGAGGGGCCTTCCCCCGGAGAGGGTGGCGGAGGCCGTGCTCAAGGCCCTGGAAAGCCCAAACCCCAGG GCCCGCTACCTGGTGGCCCACCCGGCCCGGGCCCGGGAAACCCTCCTCCTCAGGCTCTTTCCTGCCCCCTTACGGGACCG GCTCGTGGCCCGGTTCCTCGGCTAA
Upstream 100 bases:
>100_bases CAAACCCCTTAGGCCCCTCCCCGCCCCCCTTGGGGCGGGGGGTTGTCCTTGGCGAGGAAGTGGGGGCCGACCCTTGGGGT GGGAGGTAAACTGGGTTCAA
Downstream 100 bases:
>100_bases ATACCCCGCCGAGGCTTTGGCCTCGGCGGGGGCCCCAAAAGGGCTAGCCAGGGTCTCCCATGTTGCGAAGCCAAGGCGGG CGCTTAGGGGCTTTGTGCCC
Product: short chain dehydrogenase/reductase family oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MARAVLVTGAGSGIGLATARLLTAKGYRVYGGVRREEDAARLAQEGVVPLLLDVTREEDLLRARERLVGEGLWGLVVNAG IAVAGPLELVPLSAFREALEVNVLGAFATVKAFLPLLRASRGRVVLMGSVSGLVALPLMGPYAASKFALEALADALRVEL LPFGVRVVLIEPGSVATPIWERSLRRAEGYLEPPPPGTEGVYGRYLEVARRVAERSAKRGLPPERVAEAVLKALESPNPR ARYLVAHPARARETLLLRLFPAPLRDRLVARFLG
Sequences:
>Translated_274_residues MARAVLVTGAGSGIGLATARLLTAKGYRVYGGVRREEDAARLAQEGVVPLLLDVTREEDLLRARERLVGEGLWGLVVNAG IAVAGPLELVPLSAFREALEVNVLGAFATVKAFLPLLRASRGRVVLMGSVSGLVALPLMGPYAASKFALEALADALRVEL LPFGVRVVLIEPGSVATPIWERSLRRAEGYLEPPPPGTEGVYGRYLEVARRVAERSAKRGLPPERVAEAVLKALESPNPR ARYLVAHPARARETLLLRLFPAPLRDRLVARFLG >Mature_273_residues ARAVLVTGAGSGIGLATARLLTAKGYRVYGGVRREEDAARLAQEGVVPLLLDVTREEDLLRARERLVGEGLWGLVVNAGI AVAGPLELVPLSAFREALEVNVLGAFATVKAFLPLLRASRGRVVLMGSVSGLVALPLMGPYAASKFALEALADALRVELL PFGVRVVLIEPGSVATPIWERSLRRAEGYLEPPPPGTEGVYGRYLEVARRVAERSAKRGLPPERVAEAVLKALESPNPRA RYLVAHPARARETLLLRLFPAPLRDRLVARFLG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI223718074, Length=260, Percent_Identity=39.2307692307692, Blast_Score=138, Evalue=6e-33, Organism=Homo sapiens, GI44680136, Length=292, Percent_Identity=31.1643835616438, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI44680133, Length=292, Percent_Identity=31.1643835616438, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI17738292, Length=292, Percent_Identity=31.1643835616438, Blast_Score=129, Evalue=3e-30, Organism=Homo sapiens, GI150247226, Length=260, Percent_Identity=35.3846153846154, Blast_Score=127, Evalue=1e-29, Organism=Homo sapiens, GI119392083, Length=262, Percent_Identity=35.8778625954198, Blast_Score=126, Evalue=2e-29, Organism=Homo sapiens, GI22507405, Length=283, Percent_Identity=33.5689045936396, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI40548397, Length=283, Percent_Identity=31.4487632508834, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI214010158, Length=283, Percent_Identity=31.4487632508834, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI214010156, Length=283, Percent_Identity=31.4487632508834, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI22758144, Length=283, Percent_Identity=31.4487632508834, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI19743808, Length=285, Percent_Identity=32.280701754386, Blast_Score=117, Evalue=8e-27, Organism=Homo sapiens, GI50726952, Length=257, Percent_Identity=35.408560311284, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI7657478, Length=251, Percent_Identity=33.4661354581673, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI4504503, Length=292, Percent_Identity=27.7397260273973, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI59889578, Length=172, Percent_Identity=36.046511627907, Blast_Score=88, Evalue=8e-18, Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=30.952380952381, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI142976729, Length=185, Percent_Identity=32.4324324324324, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI20149619, Length=247, Percent_Identity=26.7206477732794, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=30.3664921465969, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI7706318, Length=196, Percent_Identity=31.6326530612245, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI32455239, Length=167, Percent_Identity=29.940119760479, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI5031765, Length=167, Percent_Identity=29.940119760479, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI40254992, Length=218, Percent_Identity=31.1926605504587, Blast_Score=65, Evalue=4e-11, Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=31.9148936170213, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=31.7460317460317, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI1786701, Length=273, Percent_Identity=34.0659340659341, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=32.4324324324324, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1789057, Length=263, Percent_Identity=26.9961977186312, Blast_Score=64, Evalue=9e-12, Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=28.4210526315789, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787335, Length=202, Percent_Identity=29.7029702970297, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115534660, Length=261, Percent_Identity=31.4176245210728, Blast_Score=130, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17557780, Length=292, Percent_Identity=32.1917808219178, Blast_Score=125, Evalue=2e-29, Organism=Caenorhabditis elegans, GI193210355, Length=255, Percent_Identity=30.9803921568627, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI32563809, Length=295, Percent_Identity=30.1694915254237, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI17507613, Length=295, Percent_Identity=30.1694915254237, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI71997402, Length=268, Percent_Identity=27.6119402985075, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI17570069, Length=281, Percent_Identity=27.0462633451957, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71994600, Length=239, Percent_Identity=29.2887029288703, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71994604, Length=237, Percent_Identity=29.1139240506329, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=188, Percent_Identity=32.4468085106383, Blast_Score=93, Evalue=4e-20, Organism=Saccharomyces cerevisiae, GI6323882, Length=205, Percent_Identity=35.1219512195122, Blast_Score=77, Evalue=3e-15, Organism=Drosophila melanogaster, GI24651139, Length=304, Percent_Identity=29.9342105263158, Blast_Score=98, Evalue=7e-21, Organism=Drosophila melanogaster, GI19922066, Length=259, Percent_Identity=30.5019305019305, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI20128793, Length=203, Percent_Identity=32.0197044334975, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=27.7551020408163, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI281364892, Length=166, Percent_Identity=31.3253012048193, Blast_Score=78, Evalue=8e-15, Organism=Drosophila melanogaster, GI28571526, Length=201, Percent_Identity=32.3383084577114, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24663911, Length=268, Percent_Identity=28.7313432835821, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI28571387, Length=254, Percent_Identity=29.1338582677165, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=29.6442687747036, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=29.4416243654822, Blast_Score=73, Evalue=3e-13, Organism=Drosophila melanogaster, GI21357041, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI21356301, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24643142, Length=199, Percent_Identity=30.1507537688442, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648944, Length=192, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=33.1550802139037, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29471; Mature: 29340
Theoretical pI: Translated: 10.80; Mature: 10.80
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARAVLVTGAGSGIGLATARLLTAKGYRVYGGVRREEDAARLAQEGVVPLLLDVTREEDL CCCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHH LRARERLVGEGLWGLVVNAGIAVAGPLELVPLSAFREALEVNVLGAFATVKAFLPLLRAS HHHHHHHHHCCHHHHHHHCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RGRVVLMGSVSGLVALPLMGPYAASKFALEALADALRVELLPFGVRVVLIEPGSVATPIW CCCEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCHHH ERSLRRAEGYLEPPPPGTEGVYGRYLEVARRVAERSAKRGLPPERVAEAVLKALESPNPR HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC ARYLVAHPARARETLLLRLFPAPLRDRLVARFLG EEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHCC >Mature Secondary Structure ARAVLVTGAGSGIGLATARLLTAKGYRVYGGVRREEDAARLAQEGVVPLLLDVTREEDL CCEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCHHHH LRARERLVGEGLWGLVVNAGIAVAGPLELVPLSAFREALEVNVLGAFATVKAFLPLLRAS HHHHHHHHHCCHHHHHHHCCEEEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RGRVVLMGSVSGLVALPLMGPYAASKFALEALADALRVELLPFGVRVVLIEPGSVATPIW CCCEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCHHH ERSLRRAEGYLEPPPPGTEGVYGRYLEVARRVAERSAKRGLPPERVAEAVLKALESPNPR HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC ARYLVAHPARARETLLLRLFPAPLRDRLVARFLG EEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]