Click here to switch to the map view.

The map label for this gene is yqeZ [H]

Identifier: 54295797

GI number: 54295797

Start: 3292920

End: 3294425

Strand: Reverse

Name: yqeZ [H]

Synonym: lpl2887

Alternate gene names: 54295797

Gene position: 3294425-3292920 (Counterclockwise)

Preceding gene: 54295798

Following gene: 54295796

Centisome position: 98.47

GC content: 40.44

Gene sequence:

>1506_bases
ATGCATCGGGATTGCGTCAGGCAAGAGGAGCTGCACAAACTCAATAATCTTTTTTGCAAATGGGCTGCGGTGACAAGAAC
TCTGCAAGGAATAATATTCAGAAGCAGACTATCTGTGTCAGTTCTTGAAGATTCAGATTCTGTAGCAGTAAAACAATCCC
CGCCATCGGTAACGTGCAAAATCAGGCTCAGTAAATTCATGCAAACAAGTTGTATTTTTATATTCCTTACCCTGTTCCTT
TTGGTTGGATTGCAAACTTCCTTTGCAGCAAAAATTGTAGAGTTGAATATAAAAGGACCAATTGGCCCTGCGACAGCAGA
TTATTTGGAAAGAGGTATTAAAAGCGCTCAAGATGCTGATTTGATAGTGATTCTAATCGATACACCAGGCGGTTTATATG
ATTCAACACGAAATATCATTCAGTTATTTTTACTTTCTGATGTGCCCATAGTGACTTATGTAAGTCCTACTGGAGCAAGG
GCTGCAAGTGCAGGAACCTATTTAATGTACGCGAGTACATTAGCGGCAATGGCGCCTGGTACTCAAATGGGGGCTGCAAG
TCCTGTCAGCCTTGGCACAGGATTCAGTGAAGGTGAAAAAGATGAGAAAAAAAAATCAACTATGGAAAATAAGGTAACTC
ATGATGCTGTAGCAACAATAAGGTCTCTTGCTCAACTGAGAGGACGCGATCTTGATTTTGCTGAAAAGGCAGTGACAGAA
GGCAAATCCATAACAGCGAATGAAGCCCTCAGCAAGGGGGTGGTCAATTATATTGCAAAAAATAGAGATGATTTATTGTC
TCAAATCAATGGAATAAAAGTCAGTCAAAATAACAAGACAATAACTATCAATACCGAAAACCCTGACATTCAAGTAATCA
ATCCAGATTGGAGAACCCGCTTTCTATCAGTCATTACCAACCCTACAGTGGCTTATTTATTATTGCTACTTGGAATTTAT
GGAATTTTCTTTGAATTGGTTAATCCAGGTTATGTTTTACCTGGAGTAGTTGGCGCAGTTTCAATGCTTTTTGCGCTGTA
TGCGCTGCAGCTGTTACCTATAAATTATGCAGGTTTGGGCTTGATTATTTTAGGTATTTTATTTGTCATAGCCGAGGCAT
TTACCCCAAGTTTTGGAGCGTTAGGTGTAGGAGGAACTGTTTCTTTTATTTTAGGTTCCATTATGCTGATGAACACGGAA
CACCTGGCTTTTCAGATAGCGTGGTCAGCAATTTGGGCTATGGCAGTTCTGAATATATTGATTTTTGTTTTGGTTCTGGG
GATGTTAATTAAATCTCGAAACCAAAAAATCAGACATGGCCTGGAAACATTGGTGGGCGCAAAAGGCAGGGCGTTAGGAG
ACATTCATCTGGAAGGTCAGGCTGTAATTAAGGGAGAGATTTGGAATGTCCATTCAATCTCGCCAATCGCGGCAAATAAA
AGTGTTAAAGTCACGCGAGCATCAGGATTATTGTTGGAAGTGGAGGAAGATCAGTCGGTTTATTAG

Upstream 100 bases:

>100_bases
AACTCACTTTGATAATACTGAATTGACGTGACCAGCCCCTTTGTTTTTTTCAACCTGTGCTATCTTTTATTTTATAACTA
CCTCTTAAAGGGATGTAAAA

Downstream 100 bases:

>100_bases
TTGGTTATTCCATATTGAATGAAAAGGATAAAGGAGAGCGAGATGGGACCATTTCTGGTTATATTACTGGTAGCGATAGG
CTTGCTACTGGCTTCAATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MHRDCVRQEELHKLNNLFCKWAAVTRTLQGIIFRSRLSVSVLEDSDSVAVKQSPPSVTCKIRLSKFMQTSCIFIFLTLFL
LVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGAR
AASAGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDLDFAEKAVTE
GKSITANEALSKGVVNYIAKNRDDLLSQINGIKVSQNNKTITINTENPDIQVINPDWRTRFLSVITNPTVAYLLLLLGIY
GIFFELVNPGYVLPGVVGAVSMLFALYALQLLPINYAGLGLIILGILFVIAEAFTPSFGALGVGGTVSFILGSIMLMNTE
HLAFQIAWSAIWAMAVLNILIFVLVLGMLIKSRNQKIRHGLETLVGAKGRALGDIHLEGQAVIKGEIWNVHSISPIAANK
SVKVTRASGLLLEVEEDQSVY

Sequences:

>Translated_501_residues
MHRDCVRQEELHKLNNLFCKWAAVTRTLQGIIFRSRLSVSVLEDSDSVAVKQSPPSVTCKIRLSKFMQTSCIFIFLTLFL
LVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGAR
AASAGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDLDFAEKAVTE
GKSITANEALSKGVVNYIAKNRDDLLSQINGIKVSQNNKTITINTENPDIQVINPDWRTRFLSVITNPTVAYLLLLLGIY
GIFFELVNPGYVLPGVVGAVSMLFALYALQLLPINYAGLGLIILGILFVIAEAFTPSFGALGVGGTVSFILGSIMLMNTE
HLAFQIAWSAIWAMAVLNILIFVLVLGMLIKSRNQKIRHGLETLVGAKGRALGDIHLEGQAVIKGEIWNVHSISPIAANK
SVKVTRASGLLLEVEEDQSVY
>Mature_501_residues
MHRDCVRQEELHKLNNLFCKWAAVTRTLQGIIFRSRLSVSVLEDSDSVAVKQSPPSVTCKIRLSKFMQTSCIFIFLTLFL
LVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQDADLIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGAR
AASAGTYLMYASTLAAMAPGTQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDLDFAEKAVTE
GKSITANEALSKGVVNYIAKNRDDLLSQINGIKVSQNNKTITINTENPDIQVINPDWRTRFLSVITNPTVAYLLLLLGIY
GIFFELVNPGYVLPGVVGAVSMLFALYALQLLPINYAGLGLIILGILFVIAEAFTPSFGALGVGGTVSFILGSIMLMNTE
HLAFQIAWSAIWAMAVLNILIFVLVLGMLIKSRNQKIRHGLETLVGAKGRALGDIHLEGQAVIKGEIWNVHSISPIAANK
SVKVTRASGLLLEVEEDQSVY

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002810
- InterPro:   IPR002825 [H]

Pfam domain/function: PF01972 DUF114; PF01957 NfeD [H]

EC number: NA

Molecular weight: Translated: 54229; Mature: 54229

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRDCVRQEELHKLNNLFCKWAAVTRTLQGIIFRSRLSVSVLEDSDSVAVKQSPPSVTCK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCEEEE
IRLSKFMQTSCIFIFLTLFLLVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQDAD
EEHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
LIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGARAASAGTYLMYASTLAAMAPG
EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
TQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDLDFAEKAVTE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
GKSITANEALSKGVVNYIAKNRDDLLSQINGIKVSQNNKTITINTENPDIQVINPDWRTR
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCEEEEECCCCCEEEECCHHHHH
FLSVITNPTVAYLLLLLGIYGIFFELVNPGYVLPGVVGAVSMLFALYALQLLPINYAGLG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LIILGILFVIAEAFTPSFGALGVGGTVSFILGSIMLMNTEHLAFQIAWSAIWAMAVLNIL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IFVLVLGMLIKSRNQKIRHGLETLVGAKGRALGDIHLEGQAVIKGEIWNVHSISPIAANK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCC
SVKVTRASGLLLEVEEDQSVY
CEEEEECCCEEEEECCCCCCC
>Mature Secondary Structure
MHRDCVRQEELHKLNNLFCKWAAVTRTLQGIIFRSRLSVSVLEDSDSVAVKQSPPSVTCK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEECCCCCEEEE
IRLSKFMQTSCIFIFLTLFLLVGLQTSFAAKIVELNIKGPIGPATADYLERGIKSAQDAD
EEHHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEEEECCCCCCCHHHHHHHHHCCCCCCC
LIVILIDTPGGLYDSTRNIIQLFLLSDVPIVTYVSPTGARAASAGTYLMYASTLAAMAPG
EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
TQMGAASPVSLGTGFSEGEKDEKKKSTMENKVTHDAVATIRSLAQLRGRDLDFAEKAVTE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHC
GKSITANEALSKGVVNYIAKNRDDLLSQINGIKVSQNNKTITINTENPDIQVINPDWRTR
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCEEEECCCCEEEEECCCCCEEEECCHHHHH
FLSVITNPTVAYLLLLLGIYGIFFELVNPGYVLPGVVGAVSMLFALYALQLLPINYAGLG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LIILGILFVIAEAFTPSFGALGVGGTVSFILGSIMLMNTEHLAFQIAWSAIWAMAVLNIL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
IFVLVLGMLIKSRNQKIRHGLETLVGAKGRALGDIHLEGQAVIKGEIWNVHSISPIAANK
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCC
SVKVTRASGLLLEVEEDQSVY
CEEEEECCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]