Click here to switch to the map view.

The map label for this gene is 54294878

Identifier: 54294878

GI number: 54294878

Start: 2197108

End: 2198772

Strand: Direct

Name: 54294878

Synonym: lpl1957

Alternate gene names: NA

Gene position: 2197108-2198772 (Clockwise)

Preceding gene: 54294877

Following gene: 54294879

Centisome position: 65.67

GC content: 37.06

Gene sequence:

>1665_bases
ATGAAAGATTTTGTCATTGTTGGGGCTGGGCCAATAGGCTTATATTGGGCTGCAAGACTTGCACAAATAAAAGAAAGTTC
GGGATTACCTATCAATATTGTAGTTATCGACCCAAGAGCGGGCAATTACAATCGAGAAAGGATAGTATCCAATGAAGCAA
TCAAATCGATAAGCTCCCGATTCTCAATCAGTATGCCGTCCGGCAAAGGGATCCCGAGTGAGGCCATGTATATCAGGGAC
TTTGAAAAATCACTATACGAATATTGCGAAAGTAAGGGTGTAACATTTAAAAAAGGGACTTTTTCCGGCCTAAGCGACAA
TTTGGTTTCGTATAAAGATAATAAGCAAAACATCCGTACAGTCAAATGTGACATGGTAGTTGATTGTTCTGGTTCTAATC
GTATGGTTCTCAAAGAAACTAATCGCTTGCTGGGAAAAGAAGTATTTGAAATCAAGACATTGGGTAAAAACCCACATACC
AATCATTTTTCTTGCTATATGTCATTAAGCACTGAAGAAGCGAAGAAACTACTCATCCCAGACGAAATAGATCCTTTGCT
TCAGGCAAAACAATTATGCAAATTACGACAAAAATATGATTGGCCAAATTTTTCATTCCCAGTGGTCGACATACGCTCTG
CAAAAAATGAAGAAGGTGGCGTTAATTATTTTATTTATTATGAAGTACCCGATAATTTGAAAGAGAAAGACAAGAGTGTA
CAAATTGAATTTCTTAAAGATTTACTCAAATTGAAATACGGTTTTGAAGACATTGATTTTACAATTCATTCGTTTGGACA
TTTCCCTGTTTGTCCCAAGTATGTCGATAAGCCATTTTATCTTGGTGAAGACTTACCTGTTGTTCTGGCAGGCGGTGATT
GTCAAATTGAACCCGATTATCGTAAAGGAATTGGCATAGAAAGTGGAATTGAACGTGCCAATTTTCTATTTGATACTGTA
CATGGTACAAGTAAAGGACTGGGGTTCTTATTTGATAATTACTATCAACAAGTAGCCAGATATGTAGGCTATCATGGCAA
CCTGATTGAACAGTTTTATCTGCAAAGAGTGGATAACATTAAAGGCTCTTCGCTTGAGCAAGCAAAGAAAATTCTTTGCT
CTGCTTGCGGGTCAGTTAAAGAAATCGAAGATGTTGCCGCCATTGCTAGCGAATTAAAGCTTTTAGGCAATGAACTTTTC
AAGAAACCTAATTATGAAAGTGCTTTGGAATGCTATCTTAATGCTATCCATTTGTATCAATCCTTTGAAAAAGCCTTGCC
ACTGACAATGGATTTTGTGACATTGCATTCCAATGCCTGCCAAACCTGCCTGAAGTTAAAAAAATATGAACAATGCATAA
ATCTGGCAAATGAAGGCATCAAGGCTTATGCGGAAATAAAAGCAGAGGATAAAGAGATGCTTTTCAAATTATTATTCCGA
AAAGCCTCAGCCCTCGTTGAACTAGGTAATGCTTTTGATGTCAAGACACAAAGAAAAGAGTTCGATGAGGCATTGAAAGA
TCTGAAAGAAACATATGAGCTAATGCAGGAAAACTCAGGTGTGAATAATACCGCCTTTGTTAAGCAGATTCAGACCAAAA
TTGTAACTATCGAGAAAAAACTTCCTCCTCCACAAGAGGAAATAAATAAAATCGAATTTATTTAG

Upstream 100 bases:

>100_bases
TAATTCAGCGATGAACAAAGCAATCAAATTATCCTCTTAAGGTTTGATTAATATTCTTACATTATAATTACTCAATATAA
CCCTTGAGTGAGGATATCAA

Downstream 100 bases:

>100_bases
CTTTAAATTGGTAACATTATAAAAATGCCTGGCTTGCTCATTAATGGATAGAAATCTATCTGACAATGAACAAGCCTAAT
CATTATAACTCTCTTCCCCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 554; Mature: 554

Protein sequence:

>554_residues
MKDFVIVGAGPIGLYWAARLAQIKESSGLPINIVVIDPRAGNYNRERIVSNEAIKSISSRFSISMPSGKGIPSEAMYIRD
FEKSLYEYCESKGVTFKKGTFSGLSDNLVSYKDNKQNIRTVKCDMVVDCSGSNRMVLKETNRLLGKEVFEIKTLGKNPHT
NHFSCYMSLSTEEAKKLLIPDEIDPLLQAKQLCKLRQKYDWPNFSFPVVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSV
QIEFLKDLLKLKYGFEDIDFTIHSFGHFPVCPKYVDKPFYLGEDLPVVLAGGDCQIEPDYRKGIGIESGIERANFLFDTV
HGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNIKGSSLEQAKKILCSACGSVKEIEDVAAIASELKLLGNELF
KKPNYESALECYLNAIHLYQSFEKALPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFR
KASALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKKLPPPQEEINKIEFI

Sequences:

>Translated_554_residues
MKDFVIVGAGPIGLYWAARLAQIKESSGLPINIVVIDPRAGNYNRERIVSNEAIKSISSRFSISMPSGKGIPSEAMYIRD
FEKSLYEYCESKGVTFKKGTFSGLSDNLVSYKDNKQNIRTVKCDMVVDCSGSNRMVLKETNRLLGKEVFEIKTLGKNPHT
NHFSCYMSLSTEEAKKLLIPDEIDPLLQAKQLCKLRQKYDWPNFSFPVVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSV
QIEFLKDLLKLKYGFEDIDFTIHSFGHFPVCPKYVDKPFYLGEDLPVVLAGGDCQIEPDYRKGIGIESGIERANFLFDTV
HGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNIKGSSLEQAKKILCSACGSVKEIEDVAAIASELKLLGNELF
KKPNYESALECYLNAIHLYQSFEKALPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFR
KASALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKKLPPPQEEINKIEFI
>Mature_554_residues
MKDFVIVGAGPIGLYWAARLAQIKESSGLPINIVVIDPRAGNYNRERIVSNEAIKSISSRFSISMPSGKGIPSEAMYIRD
FEKSLYEYCESKGVTFKKGTFSGLSDNLVSYKDNKQNIRTVKCDMVVDCSGSNRMVLKETNRLLGKEVFEIKTLGKNPHT
NHFSCYMSLSTEEAKKLLIPDEIDPLLQAKQLCKLRQKYDWPNFSFPVVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSV
QIEFLKDLLKLKYGFEDIDFTIHSFGHFPVCPKYVDKPFYLGEDLPVVLAGGDCQIEPDYRKGIGIESGIERANFLFDTV
HGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNIKGSSLEQAKKILCSACGSVKEIEDVAAIASELKLLGNELF
KKPNYESALECYLNAIHLYQSFEKALPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFR
KASALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKKLPPPQEEINKIEFI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62938; Mature: 62938

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDFVIVGAGPIGLYWAARLAQIKESSGLPINIVVIDPRAGNYNRERIVSNEAIKSISSR
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
FSISMPSGKGIPSEAMYIRDFEKSLYEYCESKGVTFKKGTFSGLSDNLVSYKDNKQNIRT
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEE
VKCDMVVDCSGSNRMVLKETNRLLGKEVFEIKTLGKNPHTNHFSCYMSLSTEEAKKLLIP
EEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHCCCC
DEIDPLLQAKQLCKLRQKYDWPNFSFPVVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSV
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCCHHHCCCC
QIEFLKDLLKLKYGFEDIDFTIHSFGHFPVCPKYVDKPFYLGEDLPVVLAGGDCQIEPDY
HHHHHHHHHHHHCCCCHHCEEEECCCCCCCCHHHCCCCEECCCCCCEEEECCCEEECCCH
RKGIGIESGIERANFLFDTVHGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNI
HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
KGSSLEQAKKILCSACGSVKEIEDVAAIASELKLLGNELFKKPNYESALECYLNAIHLYQ
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SFEKALPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFR
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KASALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECC
LPPPQEEINKIEFI
CCCCHHHHHHCCCC
>Mature Secondary Structure
MKDFVIVGAGPIGLYWAARLAQIKESSGLPINIVVIDPRAGNYNRERIVSNEAIKSISSR
CCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
FSISMPSGKGIPSEAMYIRDFEKSLYEYCESKGVTFKKGTFSGLSDNLVSYKDNKQNIRT
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCCCCEE
VKCDMVVDCSGSNRMVLKETNRLLGKEVFEIKTLGKNPHTNHFSCYMSLSTEEAKKLLIP
EEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHHHHHHCCCC
DEIDPLLQAKQLCKLRQKYDWPNFSFPVVDIRSAKNEEGGVNYFIYYEVPDNLKEKDKSV
CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEEEECCCCCHHHCCCC
QIEFLKDLLKLKYGFEDIDFTIHSFGHFPVCPKYVDKPFYLGEDLPVVLAGGDCQIEPDY
HHHHHHHHHHHHCCCCHHCEEEECCCCCCCCHHHCCCCEECCCCCCEEEECCCEEECCCH
RKGIGIESGIERANFLFDTVHGTSKGLGFLFDNYYQQVARYVGYHGNLIEQFYLQRVDNI
HHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
KGSSLEQAKKILCSACGSVKEIEDVAAIASELKLLGNELFKKPNYESALECYLNAIHLYQ
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
SFEKALPLTMDFVTLHSNACQTCLKLKKYEQCINLANEGIKAYAEIKAEDKEMLFKLLFR
HHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
KASALVELGNAFDVKTQRKEFDEALKDLKETYELMQENSGVNNTAFVKQIQTKIVTIEKK
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEECC
LPPPQEEINKIEFI
CCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA